Q38796 · LUMI_ARATH
- ProteinHomeobox protein LUMINIDEPENDENS
- GeneLD
- StatusUniProtKB reviewed (Swiss-Prot)
- Amino acids953 (go to sequence)
- Protein existenceEvidence at protein level
- Annotation score5/5
Function
function
Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression.
Features
Showing features for dna binding.
Type | ID | Position(s) | Description | ||
---|---|---|---|---|---|
DNA binding | 63-123 | Homeobox | |||
GO annotations
all annotations | all molecular function | nucleotide binding | molecular_function | nucleic acid binding | dna binding | chromatin binding | dna-binding transcription factor activity | rna binding | cytoskeletal motor activity | catalytic activity | nuclease activity | signaling receptor binding | structural molecule activity | transporter activity | binding | protein binding | translation factor activity, rna binding | lipid binding | kinase activity | transferase activity | hydrolase activity | oxygen binding | enzyme regulator activity | carbohydrate binding | signaling receptor activity | translation regulator activity | transcription regulator activity | other molecular function | all biological process | carbohydrate metabolic process | generation of precursor metabolites and energy | nucleobase-containing compound metabolic process | dna metabolic process | translation | lipid metabolic process | transport | response to stress | cell cycle | cell communication | signal transduction | cell-cell signaling | multicellular organism development | circadian rhythm | biological_process | metabolic process | catabolic process | biosynthetic process | response to light stimulus | response to external stimulus | tropism | response to biotic stimulus | response to abiotic stimulus | response to endogenous stimulus | embryo development | post-embryonic development | fruit ripening | abscission | pollination | flower development | cellular process | programmed cell death | photosynthesis | cellular component organization | cell growth | protein metabolic process | cellular homeostasis | secondary metabolic process | reproductive process | cell differentiation | protein modification process | growth | epigenetic regulation of gene expression | response to chemical | anatomical structure development | regulation of molecular function | other biological process | all cellular component | cellular_component | extracellular region | cell wall | intracellular anatomical structure | nucleus | nuclear envelope | nucleoplasm | nucleolus | cytoplasm | mitochondrion | lysosome | endosome | vacuole | peroxisome | endoplasmic reticulum | golgi apparatus | cytosol | ribosome | cytoskeleton | plasma membrane | chloroplast | plastid | thylakoid | membrane | external encapsulating structure | other cellular component | |||
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Aspect | Term | |
---|---|---|
Cellular Component | nucleus | |
Molecular Function | DNA binding | |
Molecular Function | DNA-binding transcription factor activity | |
Biological Process | cell differentiation | |
Biological Process | flower development | |
Biological Process | vegetative to reproductive phase transition of meristem |
Keywords
- Molecular function
- Biological process
Names & Taxonomy
Protein names
- Recommended nameHomeobox protein LUMINIDEPENDENS
Gene names
Organism names
- Strains
- Taxonomic lineageEukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > eudicotyledons > Gunneridae > Pentapetalae > rosids > malvids > Brassicales > Brassicaceae > Camelineae > Arabidopsis
Accessions
- Primary accessionQ38796
- Secondary accessions
Proteomes
Organism-specific databases
Genome annotation databases
Subcellular Location
Phenotypes & Variants
Disruption phenotype
Plants show late flowering phenotype (mutants LD-1 and LD-3).
Features
Showing features for natural variant.
Type | ID | Position(s) | Description | ||
---|---|---|---|---|---|
Natural variant | 151 | in strain: cv. Alc-0 | |||
Natural variant | 170 | in strain: cv. Ita-0 | |||
Natural variant | 329 | in strain: cv. Cle-1, cv. Cyr, cv. Ge-0, cv. Jea, cv. Kn-0, cv. Lz-0, cv. Mar1-2, cv. Mol-1, cv. Par-2, cv. Pon, cv. Rom-1, cv. St-0, cv. Tsu-0, cv. Vou-3, cv. Wha1 and cv. Wha2 | |||
Natural variant | 445 | in strain: cv. Mar-2 | |||
Natural variant | 457 | in strain: cv. Cvi-0 | |||
Natural variant | 479 | in strain: cv. Cle-1, cv. Cyr, cv. Ge-0, cv. Jea, cv. Kn-0, cv. Lz-0, cv. Mar1-2, cv. Mol-1, cv. Par-2, cv. Pon, cv. Rom-1, cv. St-0, cv. Tsu-0, cv. Vou-3, cv. Wha1 and cv. Wha2 | |||
Natural variant | 512-520 | in strain: cv. Cle-1, cv. Cyr, cv. Ge-0, cv. Jea, cv. Kn-0, cv. Lz-0, cv. Mar1-2, cv. Mol-1, cv. Par-2, cv. Pon, cv. Rom-1, cv. St-0, cv. Tsu-0, cv. Vou-3, cv. Wha1 and cv. Wha2 | |||
Natural variant | 518 | in strain: cv. Bur-0 | |||
Natural variant | 536 | in strain: cv. Cro-1, cv. Lac-1, cv. Sakata and cv. Sha | |||
Natural variant | 542 | in strain: cv. Sakata and cv. Sha | |||
Natural variant | 618 | in strain: cv. Akita | |||
Natural variant | 761 | in strain: cv. Lac-1 | |||
Natural variant | 848 | in strain: cv. Cro-1, cv. Ita-0 and cv. Lac-1 | |||
Natural variant | 848 | in strain: cv. Blh-1 | |||
Natural variant | 848 | in strain: cv. Sakata and cv. Sha | |||
Natural variant | 856-857 | in strain: cv. Alc-0, cv. Cla-1, cv. Lac-1 and cv. Mar-2 | |||
Natural variant | 858 | in strain: cv. Kn-0, cv. Lz-0, cv. Par-2 and cv. Pon | |||
Natural variant | 874 | in strain: cv. Cro-1, cv. Sakata and cv. Sha | |||
Natural variant | 879 | in strain: cv. Cro-1 | |||
Natural variant | 884 | in strain: cv. Lac-1 | |||
Natural variant | 892 | in strain: cv. Cle-1, cv. Cro-1, cv. Cyr, cv. Ge-0, cv. Ita-0, cv. Jea, cv. Kn-0, cv. Lac-1, cv. Lz-0, cv. Mar1-2, cv. Mol-1, cv. Par-2, cv. Pon, cv. Rom-1, cv. Sakata, cv. Sha, cv. St-0, cv. Tsu-0, cv. Vou-3, cv. Wha1 and cv. Wha2 | |||
Natural variant | 923 | in strain: cv. St-0 and cv. Tsu-0 | |||
Variants
We now provide the "Disease & Variants" viewer in its own tab.
The viewer provides 123 variants from UniProt as well as other sources including ClinVar and dbSNP.
PTM/Processing
Features
Showing features for chain.
Type | ID | Position(s) | Description | ||
---|---|---|---|---|---|
Chain | PRO_0000049169 | 1-953 | Homeobox protein LUMINIDEPENDENS | ||
Proteomic databases
PTM databases
Expression
Tissue specificity
Expressed in shoot apex, root apex, leaf primordia and floral buds.
Developmental stage
Accumulates prior to flowering in the vegetative shoot apical meristem and after flowering in floral meristems.
Gene expression databases
Interaction
Subunit
Interacts with SUF4.
Binary interactions
Type | Entry 1 | Entry 2 | Number of experiments | IntAct | |
---|---|---|---|---|---|
BINARY | Q38796 | SUF4 Q9C5G0 | 3 | EBI-2126221, EBI-2126140 |
Protein-protein interaction databases
Structure
Family & Domains
Features
Showing features for region, compositional bias, repeat.
Type | ID | Position(s) | Description | ||
---|---|---|---|---|---|
Region | 404-430 | Disordered | |||
Compositional bias | 410-424 | Polar residues | |||
Repeat | 498-502 | 1 | |||
Region | 498-538 | 5 X 5 AA repeats of Q-P-V-N-G | |||
Repeat | 507-511 | 2 | |||
Repeat | 516-520 | 3 | |||
Repeat | 525-529 | 4 | |||
Repeat | 534-538 | 5 | |||
Region | 606-668 | Disordered | |||
Compositional bias | 650-664 | Polar residues | |||
Region | 733-763 | Disordered | |||
Region | 861-953 | Disordered | |||
Keywords
- Domain
Phylogenomic databases
Family and domain databases
Sequence
- Sequence statusComplete
- Length953
- Mass (Da)105,415
- Last updated2008-02-05 v2
- Checksum0DBFF4556190BA77
Features
Showing features for sequence conflict, compositional bias.
Type | ID | Position(s) | Description | ||
---|---|---|---|---|---|
Sequence conflict | 320 | in Ref. 7; AAK00674 | |||
Compositional bias | 410-424 | Polar residues | |||
Sequence conflict | 650 | in Ref. 1 | |||
Compositional bias | 650-664 | Polar residues | |||
Keywords
- Technical term
Sequence databases
Nucleotide Sequence | Protein Sequence | Molecule Type | Status | |
---|---|---|---|---|
U03456 EMBL· GenBank· DDBJ | AAA19115.1 EMBL· GenBank· DDBJ | mRNA | ||
AY849995 EMBL· GenBank· DDBJ | AAX51265.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AM180092 EMBL· GenBank· DDBJ | CAJ53827.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AM180093 EMBL· GenBank· DDBJ | CAJ53828.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AM180094 EMBL· GenBank· DDBJ | CAJ53829.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AM180095 EMBL· GenBank· DDBJ | CAJ53830.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AM180096 EMBL· GenBank· DDBJ | CAJ53831.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AM180097 EMBL· GenBank· DDBJ | CAJ53832.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AM180098 EMBL· GenBank· DDBJ | CAJ53833.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AM180099 EMBL· GenBank· DDBJ | CAJ53834.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AM180100 EMBL· GenBank· DDBJ | CAJ53835.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AM180101 EMBL· GenBank· DDBJ | CAJ53836.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AM180102 EMBL· GenBank· DDBJ | CAJ53837.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AM180103 EMBL· GenBank· DDBJ | CAJ53838.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AM180104 EMBL· GenBank· DDBJ | CAJ53839.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AM180105 EMBL· GenBank· DDBJ | CAJ53840.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AM180106 EMBL· GenBank· DDBJ | CAJ53841.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AM180107 EMBL· GenBank· DDBJ | CAJ53842.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AM180108 EMBL· GenBank· DDBJ | CAJ53843.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AM180109 EMBL· GenBank· DDBJ | CAJ53844.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AM180110 EMBL· GenBank· DDBJ | CAJ53845.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AM180111 EMBL· GenBank· DDBJ | CAJ53846.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AM180112 EMBL· GenBank· DDBJ | CAJ53847.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AM180113 EMBL· GenBank· DDBJ | CAJ53848.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AM180114 EMBL· GenBank· DDBJ | CAJ53849.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AM180115 EMBL· GenBank· DDBJ | CAJ53850.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AM180116 EMBL· GenBank· DDBJ | CAJ53851.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AM180117 EMBL· GenBank· DDBJ | CAJ53852.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AM180118 EMBL· GenBank· DDBJ | CAJ53853.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AM180119 EMBL· GenBank· DDBJ | CAJ53854.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AM180120 EMBL· GenBank· DDBJ | CAJ53855.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AM180121 EMBL· GenBank· DDBJ | CAJ53856.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AM180122 EMBL· GenBank· DDBJ | CAJ53857.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AM180123 EMBL· GenBank· DDBJ | CAJ53858.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AM180124 EMBL· GenBank· DDBJ | CAJ53859.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AM180125 EMBL· GenBank· DDBJ | CAJ53860.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AM180126 EMBL· GenBank· DDBJ | CAJ53861.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AM180127 EMBL· GenBank· DDBJ | CAJ53862.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AM180128 EMBL· GenBank· DDBJ | CAJ53863.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AM180129 EMBL· GenBank· DDBJ | CAJ53864.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AM180130 EMBL· GenBank· DDBJ | CAJ53865.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AM180131 EMBL· GenBank· DDBJ | CAJ53866.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AM180132 EMBL· GenBank· DDBJ | CAJ53867.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AM180133 EMBL· GenBank· DDBJ | CAJ53868.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AM180134 EMBL· GenBank· DDBJ | CAJ53869.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AC002330 EMBL· GenBank· DDBJ | AAC78261.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AL161494 EMBL· GenBank· DDBJ | CAB80749.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
CP002687 EMBL· GenBank· DDBJ | AEE82192.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
CP002687 EMBL· GenBank· DDBJ | AEE82193.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AK226746 EMBL· GenBank· DDBJ | BAE98847.1 EMBL· GenBank· DDBJ | mRNA | ||
AF229402 EMBL· GenBank· DDBJ | AAK00674.1 EMBL· GenBank· DDBJ | Genomic DNA |