Q38796 · LUMI_ARATH

Function

function

Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression.

Features

Showing features for dna binding.

1953100200300400500600700800900
TypeIDPosition(s)Description
DNA binding63-123Homeobox

GO annotations

all annotationsall molecular functionnucleotide bindingmolecular_functionnucleic acid bindingdna bindingchromatin bindingdna-binding transcription factor activityrna bindingcytoskeletal motor activitycatalytic activitynuclease activitysignaling receptor bindingstructural molecule activitytransporter activitybindingprotein bindingtranslation factor activity, rna bindinglipid bindingkinase activitytransferase activityhydrolase activityoxygen bindingenzyme regulator activitycarbohydrate bindingsignaling receptor activitytranslation regulator activitytranscription regulator activityother molecular functionall biological processcarbohydrate metabolic processgeneration of precursor metabolites and energynucleobase-containing compound metabolic processdna metabolic processtranslationlipid metabolic processtransportresponse to stresscell cyclecell communicationsignal transductioncell-cell signalingmulticellular organism developmentcircadian rhythmbiological_processmetabolic processcatabolic processbiosynthetic processresponse to light stimulusresponse to external stimulustropismresponse to biotic stimulusresponse to abiotic stimulusresponse to endogenous stimulusembryo developmentpost-embryonic developmentfruit ripeningabscissionpollinationflower developmentcellular processprogrammed cell deathphotosynthesiscellular component organizationcell growthprotein metabolic processcellular homeostasissecondary metabolic processreproductive processcell differentiationprotein modification processgrowthepigenetic regulation of gene expressionresponse to chemicalanatomical structure developmentregulation of molecular functionother biological processall cellular componentcellular_componentextracellular regioncell wallintracellular anatomical structurenucleusnuclear envelopenucleoplasmnucleoluscytoplasmmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuscytosolribosomecytoskeletonplasma membranechloroplastplastidthylakoidmembraneexternal encapsulating structureother cellular component
Cell color indicative of number of GO terms
AspectTerm
Cellular Componentnucleus
Molecular FunctionDNA binding
Molecular FunctionDNA-binding transcription factor activity
Biological Processcell differentiation
Biological Processflower development
Biological Processvegetative to reproductive phase transition of meristem

Keywords

Names & Taxonomy

Protein names

  • Recommended name
    Homeobox protein LUMINIDEPENDENS

Gene names

    • Name
      LD
    • ORF names
      T10P11.15
    • Ordered locus names
      At4g02560

Organism names

  • Taxonomic identifier
  • Strains
    • cv. Wassilewskija
    • cv. Lz-0
    • cv. Akita
    • cv. Alc-0
    • cv. All1-1
  • Taxonomic lineage
    Eukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > eudicotyledons > Gunneridae > Pentapetalae > rosids > malvids > Brassicales > Brassicaceae > Camelineae > Arabidopsis

Accessions

  • Primary accession
    Q38796
  • Secondary accessions
    • O22771
    • Q0KG59
    • Q0KG64
    • Q0KG74
    • Q0KG76

Proteomes

Organism-specific databases

Genome annotation databases

Subcellular Location

Keywords

Phenotypes & Variants

Disruption phenotype

Plants show late flowering phenotype (mutants LD-1 and LD-3).

Features

Showing features for natural variant.

TypeIDPosition(s)Description
Natural variant151in strain: cv. Alc-0
Natural variant170in strain: cv. Ita-0
Natural variant329in strain: cv. Cle-1, cv. Cyr, cv. Ge-0, cv. Jea, cv. Kn-0, cv. Lz-0, cv. Mar1-2, cv. Mol-1, cv. Par-2, cv. Pon, cv. Rom-1, cv. St-0, cv. Tsu-0, cv. Vou-3, cv. Wha1 and cv. Wha2
Natural variant445in strain: cv. Mar-2
Natural variant457in strain: cv. Cvi-0
Natural variant479in strain: cv. Cle-1, cv. Cyr, cv. Ge-0, cv. Jea, cv. Kn-0, cv. Lz-0, cv. Mar1-2, cv. Mol-1, cv. Par-2, cv. Pon, cv. Rom-1, cv. St-0, cv. Tsu-0, cv. Vou-3, cv. Wha1 and cv. Wha2
Natural variant512-520in strain: cv. Cle-1, cv. Cyr, cv. Ge-0, cv. Jea, cv. Kn-0, cv. Lz-0, cv. Mar1-2, cv. Mol-1, cv. Par-2, cv. Pon, cv. Rom-1, cv. St-0, cv. Tsu-0, cv. Vou-3, cv. Wha1 and cv. Wha2
Natural variant518in strain: cv. Bur-0
Natural variant536in strain: cv. Cro-1, cv. Lac-1, cv. Sakata and cv. Sha
Natural variant542in strain: cv. Sakata and cv. Sha
Natural variant618in strain: cv. Akita
Natural variant761in strain: cv. Lac-1
Natural variant848in strain: cv. Cro-1, cv. Ita-0 and cv. Lac-1
Natural variant848in strain: cv. Blh-1
Natural variant848in strain: cv. Sakata and cv. Sha
Natural variant856-857in strain: cv. Alc-0, cv. Cla-1, cv. Lac-1 and cv. Mar-2
Natural variant858in strain: cv. Kn-0, cv. Lz-0, cv. Par-2 and cv. Pon
Natural variant874in strain: cv. Cro-1, cv. Sakata and cv. Sha
Natural variant879in strain: cv. Cro-1
Natural variant884in strain: cv. Lac-1
Natural variant892in strain: cv. Cle-1, cv. Cro-1, cv. Cyr, cv. Ge-0, cv. Ita-0, cv. Jea, cv. Kn-0, cv. Lac-1, cv. Lz-0, cv. Mar1-2, cv. Mol-1, cv. Par-2, cv. Pon, cv. Rom-1, cv. Sakata, cv. Sha, cv. St-0, cv. Tsu-0, cv. Vou-3, cv. Wha1 and cv. Wha2
Natural variant923in strain: cv. St-0 and cv. Tsu-0

Variants

We now provide the "Disease & Variants" viewer in its own tab.

The viewer provides 123 variants from UniProt as well as other sources including ClinVar and dbSNP.

Go to variant viewer

PTM/Processing

Features

Showing features for chain.

TypeIDPosition(s)Description
ChainPRO_00000491691-953Homeobox protein LUMINIDEPENDENS

Proteomic databases

PTM databases

Expression

Tissue specificity

Expressed in shoot apex, root apex, leaf primordia and floral buds.

Developmental stage

Accumulates prior to flowering in the vegetative shoot apical meristem and after flowering in floral meristems.

Gene expression databases

Interaction

Subunit

Interacts with SUF4.

Binary interactions

TypeEntry 1Entry 2Number of experimentsIntAct
BINARY Q38796SUF4 Q9C5G03EBI-2126221, EBI-2126140

Protein-protein interaction databases

Structure

Family & Domains

Features

Showing features for region, compositional bias, repeat.

Type
IDPosition(s)Description
Region404-430Disordered
Compositional bias410-424Polar residues
Repeat498-5021
Region498-5385 X 5 AA repeats of Q-P-V-N-G
Repeat507-5112
Repeat516-5203
Repeat525-5294
Repeat534-5385
Region606-668Disordered
Compositional bias650-664Polar residues
Region733-763Disordered
Region861-953Disordered

Keywords

Phylogenomic databases

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    953
  • Mass (Da)
    105,415
  • Last updated
    2008-02-05 v2
  • Checksum
    0DBFF4556190BA77
MDAFKEEIEIGSSVESLMELLDSQKVLFHSQIDQLQDVVVAQCKLTGVNPLAQEMAAGALSIKIGKRPRDLLNPKAVKYLQAVFAIKDAISKRESREISALFGITVAQVREFFVTQKTRVRKQVRLSREKVVMSNTHALQDDGVPENNNATNHVEPVPLNSIHPEACSISWGEGETVALIPPEDIPPDISDSDKYFVENIFSLLRKEETFSGQVKLMEWIMQIQDASVLIWFLSKGGVLILTTWLSQAASEEQTSVLLLILKVLCHLPLHKASPENMSAILQSVNGLRFYRISDISNRAKGLLSRWTKLFAKIQAMKKQNRNSSQIDSQSQLLLKQSIAEIMGDSSNPEDILSLSNGKSENVRRIESSQGPKLLLTSADDSTKKHMLGSNPSYNKERRKVQMVEQPGQKAAGKSPQTVRIGTSGRSRPMSADDIQKAKMRALYMQSKNSKKDPLPSAIGDSKIVAPEKPLALHSAKDSPPIQNNEAKTEDTPVLSTVQPVNGFSTIQPVNGPSAVQPVNGPLAVQPVNGPSALQPVNGPSAVIVPVQADEIKKPSTPPKSISSKVGVMMKMSSQTILKNCKRKQIDWHVPPGMELDELWRVAAGGNSKEADVQRNRNRRERETTYQSLQTIPLNPKEPWDREMDYDDSLTPEIPSQQPPEESLTEPQDSLDERRIAAGAATTSSSLSSPEPDLELLAALLKNPDLVYALTSGKPSNLAGQDMVKLLDVIKTGAPNSSSSSNKQVEERVEVSLPSPTPSTNPGMSGWGQEGIRNPFSRQNQVGTAVARSGTQLRVGSMQWHQTNEQSIPRHAPSAYSNSITLAHTEREQQQYMQPKLHHNLHFQQQQQQPISTTSYAVREPVGQMGTGTSSSWRSQQSQNSYYSHQENEIASASQVTSYQGNSQYMSSNPGYESWSPDNSPSRNQLNMRGQQQQASRKHDSSTHPYWNQNKRWR

Features

Showing features for sequence conflict, compositional bias.

Type
IDPosition(s)Description
Sequence conflict320in Ref. 7; AAK00674
Compositional bias410-424Polar residues
Sequence conflict650in Ref. 1
Compositional bias650-664Polar residues

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
U03456
EMBL· GenBank· DDBJ
AAA19115.1
EMBL· GenBank· DDBJ
mRNA
AY849995
EMBL· GenBank· DDBJ
AAX51265.1
EMBL· GenBank· DDBJ
Genomic DNA
AM180092
EMBL· GenBank· DDBJ
CAJ53827.1
EMBL· GenBank· DDBJ
Genomic DNA
AM180093
EMBL· GenBank· DDBJ
CAJ53828.1
EMBL· GenBank· DDBJ
Genomic DNA
AM180094
EMBL· GenBank· DDBJ
CAJ53829.1
EMBL· GenBank· DDBJ
Genomic DNA
AM180095
EMBL· GenBank· DDBJ
CAJ53830.1
EMBL· GenBank· DDBJ
Genomic DNA
AM180096
EMBL· GenBank· DDBJ
CAJ53831.1
EMBL· GenBank· DDBJ
Genomic DNA
AM180097
EMBL· GenBank· DDBJ
CAJ53832.1
EMBL· GenBank· DDBJ
Genomic DNA
AM180098
EMBL· GenBank· DDBJ
CAJ53833.1
EMBL· GenBank· DDBJ
Genomic DNA
AM180099
EMBL· GenBank· DDBJ
CAJ53834.1
EMBL· GenBank· DDBJ
Genomic DNA
AM180100
EMBL· GenBank· DDBJ
CAJ53835.1
EMBL· GenBank· DDBJ
Genomic DNA
AM180101
EMBL· GenBank· DDBJ
CAJ53836.1
EMBL· GenBank· DDBJ
Genomic DNA
AM180102
EMBL· GenBank· DDBJ
CAJ53837.1
EMBL· GenBank· DDBJ
Genomic DNA
AM180103
EMBL· GenBank· DDBJ
CAJ53838.1
EMBL· GenBank· DDBJ
Genomic DNA
AM180104
EMBL· GenBank· DDBJ
CAJ53839.1
EMBL· GenBank· DDBJ
Genomic DNA
AM180105
EMBL· GenBank· DDBJ
CAJ53840.1
EMBL· GenBank· DDBJ
Genomic DNA
AM180106
EMBL· GenBank· DDBJ
CAJ53841.1
EMBL· GenBank· DDBJ
Genomic DNA
AM180107
EMBL· GenBank· DDBJ
CAJ53842.1
EMBL· GenBank· DDBJ
Genomic DNA
AM180108
EMBL· GenBank· DDBJ
CAJ53843.1
EMBL· GenBank· DDBJ
Genomic DNA
AM180109
EMBL· GenBank· DDBJ
CAJ53844.1
EMBL· GenBank· DDBJ
Genomic DNA
AM180110
EMBL· GenBank· DDBJ
CAJ53845.1
EMBL· GenBank· DDBJ
Genomic DNA
AM180111
EMBL· GenBank· DDBJ
CAJ53846.1
EMBL· GenBank· DDBJ
Genomic DNA
AM180112
EMBL· GenBank· DDBJ
CAJ53847.1
EMBL· GenBank· DDBJ
Genomic DNA
AM180113
EMBL· GenBank· DDBJ
CAJ53848.1
EMBL· GenBank· DDBJ
Genomic DNA
AM180114
EMBL· GenBank· DDBJ
CAJ53849.1
EMBL· GenBank· DDBJ
Genomic DNA
AM180115
EMBL· GenBank· DDBJ
CAJ53850.1
EMBL· GenBank· DDBJ
Genomic DNA
AM180116
EMBL· GenBank· DDBJ
CAJ53851.1
EMBL· GenBank· DDBJ
Genomic DNA
AM180117
EMBL· GenBank· DDBJ
CAJ53852.1
EMBL· GenBank· DDBJ
Genomic DNA
AM180118
EMBL· GenBank· DDBJ
CAJ53853.1
EMBL· GenBank· DDBJ
Genomic DNA
AM180119
EMBL· GenBank· DDBJ
CAJ53854.1
EMBL· GenBank· DDBJ
Genomic DNA
AM180120
EMBL· GenBank· DDBJ
CAJ53855.1
EMBL· GenBank· DDBJ
Genomic DNA
AM180121
EMBL· GenBank· DDBJ
CAJ53856.1
EMBL· GenBank· DDBJ
Genomic DNA
AM180122
EMBL· GenBank· DDBJ
CAJ53857.1
EMBL· GenBank· DDBJ
Genomic DNA
AM180123
EMBL· GenBank· DDBJ
CAJ53858.1
EMBL· GenBank· DDBJ
Genomic DNA
AM180124
EMBL· GenBank· DDBJ
CAJ53859.1
EMBL· GenBank· DDBJ
Genomic DNA
AM180125
EMBL· GenBank· DDBJ
CAJ53860.1
EMBL· GenBank· DDBJ
Genomic DNA
AM180126
EMBL· GenBank· DDBJ
CAJ53861.1
EMBL· GenBank· DDBJ
Genomic DNA
AM180127
EMBL· GenBank· DDBJ
CAJ53862.1
EMBL· GenBank· DDBJ
Genomic DNA
AM180128
EMBL· GenBank· DDBJ
CAJ53863.1
EMBL· GenBank· DDBJ
Genomic DNA
AM180129
EMBL· GenBank· DDBJ
CAJ53864.1
EMBL· GenBank· DDBJ
Genomic DNA
AM180130
EMBL· GenBank· DDBJ
CAJ53865.1
EMBL· GenBank· DDBJ
Genomic DNA
AM180131
EMBL· GenBank· DDBJ
CAJ53866.1
EMBL· GenBank· DDBJ
Genomic DNA
AM180132
EMBL· GenBank· DDBJ
CAJ53867.1
EMBL· GenBank· DDBJ
Genomic DNA
AM180133
EMBL· GenBank· DDBJ
CAJ53868.1
EMBL· GenBank· DDBJ
Genomic DNA
AM180134
EMBL· GenBank· DDBJ
CAJ53869.1
EMBL· GenBank· DDBJ
Genomic DNA
AC002330
EMBL· GenBank· DDBJ
AAC78261.1
EMBL· GenBank· DDBJ
Genomic DNA
AL161494
EMBL· GenBank· DDBJ
CAB80749.1
EMBL· GenBank· DDBJ
Genomic DNA
CP002687
EMBL· GenBank· DDBJ
AEE82192.1
EMBL· GenBank· DDBJ
Genomic DNA
CP002687
EMBL· GenBank· DDBJ
AEE82193.1
EMBL· GenBank· DDBJ
Genomic DNA
AK226746
EMBL· GenBank· DDBJ
BAE98847.1
EMBL· GenBank· DDBJ
mRNA
AF229402
EMBL· GenBank· DDBJ
AAK00674.1
EMBL· GenBank· DDBJ
Genomic DNA

Genome annotation databases

Similar Proteins

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