Q2YHE4 · Q2YHE4_9FLAV

Function

function

Acts as a cofactor for the NS3 protease activity.
Packages viral RNA to form a viral nucleocapsid and thereby protects viral RNA. Also plays a role in transcription regulation. Protects the incoming virus against IFN-induced effectors.
Plays a role in the regulation of viral RNA replication.

Catalytic activity

Features

Showing features for active site, site.

TypeIDPosition(s)Description
Active site49For N-terminal protease activity
Active site69For N-terminal protease activity
Site168-169Cleavage; by autolysis
Active site1658Charge relay system; for serine protease NS3 activity
Active site1695Charge relay system; for serine protease NS3 activity
Active site1752Charge relay system; for serine protease NS3 activity

GO annotations

AspectTerm
Cellular Componentcytoplasm
Cellular Componenthost cell cytoplasm
Cellular Componenthost cell membrane
Cellular Componentmembrane
Cellular Componentvirion membrane
Molecular FunctionATP binding
Molecular Functionchannel activity
Molecular Functioncysteine-type endopeptidase activity
Molecular FunctionGTP binding
Molecular Functionribonuclease T2 activity
Molecular Functionribonucleoside triphosphate phosphatase activity
Molecular FunctionRNA binding
Molecular FunctionRNA helicase activity
Molecular FunctionRNA-dependent RNA polymerase activity
Molecular Functionserine-type endopeptidase activity
Molecular Functionserine-type exopeptidase activity
Biological Processfusion of virus membrane with host endosome membrane
Biological Processinduction by virus of host autophagy
Biological Processmonoatomic ion transmembrane transport
Biological Processproteolysis
Biological Processsymbiont entry into host cell
Biological Processsymbiont-mediated suppression of host cytoplasmic pattern recognition receptor signaling pathway via inhibition of IRF3 activity
Biological Processviral protein processing
Biological Processviral RNA genome replication
Biological Processvirion attachment to host cell
Biological Processvirus-mediated perturbation of host defense response

Keywords

Protein family/group databases

Names & Taxonomy

Protein names

  • Recommended name
    Genome polyprotein

Organism names

  • Taxonomic identifier
  • Strain
    • 94.4/IL/94/TWN
  • Taxonomic lineage
    Viruses > Riboviria > Orthornavirae > Kitrinoviricota > Flasuviricetes > Amarillovirales > Flaviviridae > Pestivirus > Pestivirus suis

Accessions

  • Primary accession
    Q2YHE4

Proteomes

Subcellular Location

Cytoplasm
Host cytoplasm
Membrane
; Peripheral membrane protein
Virion membrane
; Peripheral membrane protein

Features

Showing features for transmembrane.

TypeIDPosition(s)Description
Transmembrane1031-1055Helical
Transmembrane1076-1095Helical
Transmembrane1115-1133Helical
Transmembrane1145-1165Helical
Transmembrane1217-1234Helical
Transmembrane1254-1271Helical
Transmembrane1283-1304Helical

Keywords

PTM/Processing

Keywords

Family & Domains

Features

Showing features for domain, region, compositional bias.

TypeIDPosition(s)Description
Domain1-168Peptidase C53
Region169-242Disordered
Compositional bias175-205Basic and acidic residues
Compositional bias216-242Basic and acidic residues
Domain1441-1589Peptidase C74
Domain1590-1763Peptidase S31
Domain1802-1960Helicase ATP-binding
Domain1978-2179Helicase C-terminal
Domain3519-3642RdRp catalytic

Sequence similarities

Belongs to the pestivirus polyprotein family.

Keywords

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    3,898
  • Mass (Da)
    437,893
  • Last updated
    2005-12-20 v1
  • Checksum
    EE9FF0490F87EE97
MELNHFELLYKTNKQKPMGAEEPVYDAAGRPFFGDPSEVHPQSTLKLPHDRGRGNIKTTLKNLPRRGDCRSGNHLGPVSGIYVKPGPVFYQDYMGPVYHRAPLEFFHEAQFCEVTKRIGRVTGSDGKLYHIYVCIDGCILLKLAKRGEPRTLKWVRNLTNCPLWVASCSDGGASSSKEKKPDRINKGKLKIAPKEHEKDSRTKPPDATIVVEGVKSQVKKKGKVKGKNTQDGLYHNKNKPPESRKKLEKALLAWAVIAVMLYQPVAAENITQWNLSDNGTNGIQHAMYLRGVNRSLHGIWPEKICKGVPTHLATDTELKEILGMMDASEKTNFTCCRLQRHEWNKHGWCNWYNIDPWIQLMNRTQANLTGGPPDKECAVTCRYDKDADINVVTQARNRPTTLTGCKKGKNFSFAGTIIESACNFNVSVEDILYGDHECGSLLQDTALYLVDGMTNTIENARQGAARVTSWLGRQLSTAGKRLERRSKTWFGAYALSPYCNVTRKVGYIWYNNNCTPACLPKNTKIIGPGKFDTNAEDGKILHEMGGHLSEFLLLSLVVLSDFAPETASALYLIFHYTIPQIHEVPEDCDTNQLNLTVELRTEDVVPSSVWNVGEYVCVRPDWWPYETKVVLLFEEAGQVIKLALRAMRDLTRVWSSASTIAFLICLIKVLRGQVVQGVIWLLLVTGAQGRLACKEGYRYAISSTNEIGLLGAEGLTTTWKDYSHNLQLDDGTVKAICTAGSFKVTAIDVVSRRYLASLHNRALPTSVTFELLFDGTRPLSEEMGDDFGFGLCPFDTSPVVKGKYNTTLLNGSAFYLVCPIGWTGVIECTAVSPTTLRTEVVKTFRREKPFPHRGECVTTMVEDEDLFNCRLGGNWTCVKGAPVTYTGGQVKRCRWCGFDFEVPDGLPHYPIGKCILANETGYRIVDTTNCNRDGVVISTEGDHECLIGNTTVKVHALDGRLGPMPCRPKKIISSAGPVRKTSCTFNYTKTLKNKYYEPRDSYFQQYMLKGEYQYWFDLDVTDHHSDYFAEFVVLVVVALLGGRYVLWLIVTYIVLTEQLAAGLQLGQGEVVLIGNLITHADIEVVVYFLLLYLIMRDEPIKKWILLLFHAMTNNPVKTMTVALLMISGVAKGGKIDGGWRRQSGTSFDIQLMLTVIVVVVMLLAKRDLTTIPLVITVATLRTAKITNGLSTDLTIATVSVVLLTWSYISDYYKYKTWLQYLISTVTGIFLIRVLKGVGELDLYTPTLPTYRPLFFILVYLISTAIVTRWNLDIAGLLLQCIPTLLMVFTMWADILTLILILPTYELTKLYYLKEVKNGAEKSWLWKTNFKRVNDIYEVDQAGEGVYLFPSKQKTSDITGTMLPLIKAILISCISNKWQLIYPLDLIFEVLYSLPKKIIDEIAGGTNFISRLVAALIEVNWALDSEEVKGLKKFFLLSSRVKELIIKHKVRNEVMVRWFDDEEVYGMPKLIGLVKAATLSKNKNCILCTVCEDRKWGGETCPKCGRFGPPVTCGMTLADFEEKHYKRIFIREDQSEGPVREEHAGYLQYRARGQLFLRNLPVLATKVKMLLVGNLGTEVGDLEHLGWVLRGPAVCKKVTEHERCTTTIMDKLTAFFGVMPRGTTPRAPVRFPTSLLKIRRGLETGWAYTHQGGISSVDHVTCGKDLLVCDSMGRTRVVCQSNNKMTDESEYGVKTDSGCPEGARCYVFNPEAVNISGTKGAMVHLQKTGGEFTCVTASGTPAFFDLKNLKGWSGLPIFEASSGRVVGRVKVGKNEDSKPTKLMSGIQTVSKNATDLTDMVKKITTMNRGEFRQITLATGAGKTTELPRSVIEEIGRHKRVLVLIPLRAAAESVYQYMRQKHPSIAFNLRIGEMKEGDMATGITYASYGYFCQMPQPKLRAAMVEYSFIFLDEYHCATPEQLAIMGKIHRFSENLRVVAMTATPAGTVTTTGQKHPIEEFIAPEVMKGEDLGSEYLDIAGLKIPVEEMKNNMLVFVPTRNMAVEAAKKLKAKGYNSGYYYSGEDPSNLRVVTSQSPYVVVATNAIESGVTLPDLDVVVDTGLKCEKRIRLSPKMPFIVTGLKRMAVTIGEQAQRRGRVGRVKPGRYYRSQETPVGSKDYHYDLLQAQRYGIEDGINITKSFREMNYDWSLYEEDSLMITQLEILNNLLISEELPMAVKNIMARTDHPEPIQLAYNSYETQVPVLFPKIRNGEVTDCYDNYTFLNARKLGDDVPPYVYATEDEDLAVELLGLDWPDPGNQGTVEAGRALKQVVGLSTAENALLVALFGYIGYQALSKRHIPIVTDIYSIEDHRLEDTTHLQYAPNAIKTEGKETELKELAQGDVQRCMEAMATYAKEGIQFMKSQALKVKDTPSYKETMNTVVSYVKKFMEALADSKEDIIRYGLWGTHTALYKSIGARLGYETAFATLVVKWLAFGGESIADHVKQAATDLVVYYIINRPQFPGDTETQQEGRKFVASLLVSALATYTYKSWNYNNLSKIVEPALATLPYAAKALKLFAPTRLESVVILSTAIYKTYLSIRRGKSDGLLGTGVSAAMEIMSQNPVSVGIAVMLGVGAVAAHNAIEASEQKRTLLMKVFVKNFLDQAATDELVKESPEKIIMALFEAVQTVGNPLRLVYHLYGVFYKGWEAKELAQRTAGRNLFTLIMFEAVELLGVNGEGKIRQLSSNYILELLYKFRDGIKSSVRKMAISWAPAPLSCDWSPTDDRIGLPQDNFSQVETNCPCGYRMKAAKNCAGEFKLLEEEGSFLCRNKFGRGSPNYRVTKYYDDYLSEIKPVIRMEGHVELYYKGATIKLDFNNSKTILATDKWEVDHSTLARELNRHTGAGYPGAYLGEKPNHKHLIERDCATITKDKVCFLKMKRGCAFTYDLSLHNLTRLIELVHKNNLEDKEIPAVTVTTWLAYTFVNEDIGTIKPAFGEKVTPERQEEIVLQPAVTVDTTEVAVTVVGEAPTMTTGETPATFVRLGPDLKGQQVLKLGVGEGQYPGTNQQRASLHEAIQGADERPSVLILGSDKATSNRVKTAKNVKIYRGRDPLEVRNMMKRGKILVIALSKVDKALLKFVDYKGTFLTRETLEALSLGKPKKRDITKTEAQWLLRLEDQMEELPDWFAAEEPIFLEANIKRDRYHLVGDIATIKEKAKQLGATDSTKISKEIGAKVYSMKLSNWVLQVENKQSTLAPLFEELLQQCPPGGQNKTTHMVTVYQLAQGNWIPVDCHVFMGTIPAKRTKTHPYEAFVKLRELLEEHKMRTLSRGASLSKHNEWIIGKIKYQGNLRTNHLLNPGKVAEQLLREGHRHIVYNKIIGSVMTANGIRLEKLPVVRAQTDTTNFHQAIRDKIGKEENLQTPGLHKKLMEVFTALKRPELESSYDAVAWEELERGINRKGAAGFFERKNIGEVLDSEKNKVEEIIDNLRRGRNIRYYETAIPKNEKRDVNDDWNAGDFVDEKKPRVIQYPEAKTRLAITKVMYKWVKQKPVVIPGYEGKTPLFQIFDKVKKEWDQFQNPVAVSFDTKAWDTQVTTRDLEVIKDIQKYYFKKKWHKFIDTLTTHMSEVPVISADGEVYIRKGQRGSGQPDTSAGNSMLNVLTMIYAFCEATGVPYKSFDRVAKIHVCGDDGFLITERALGEKFASKGVQILYEAGKPQKITEGDKMKVAYQFDDIEFCSHTPIQVRWSDNTSSYLPGRNTTTILAKMATRLDSSGEKGTIAYEKAVAFSFLLMYSWNPLIRRICLLVLSTEPQVKPGRSTTYYFEGDPISAYREVIGHNLFDLKRTSFEKLAKLNLSMSTLGVWTKHTSKRLLQDCVNIGIKEGNWLVNADRLVSSKTGNKYIPGDGHTLQGKHYEELVLARRQTNNFKGADRYNLGPIVNIVLRRLRIMMMALIGRGT

Features

Showing features for compositional bias.

TypeIDPosition(s)Description
Compositional bias175-205Basic and acidic residues
Compositional bias216-242Basic and acidic residues

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
AY646427
EMBL· GenBank· DDBJ
AAV98354.1
EMBL· GenBank· DDBJ
Genomic RNA

Similar Proteins

Disclaimer

Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. Our staff consists of biologists and biochemists that are not trained to give medical advice.
We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.
FeedbackHelp