Q0DM51 · RH3_ORYSJ

Function

function

Nuclear genome-encoded factor involved in ribosome biogenesis in chloroplasts. Binds specific group II introns in chloroplasts and facilitates their splicing. Required for normal development of chloroplasts.

Catalytic activity

Features

Showing features for binding site.

TypeIDPosition(s)Description
Binding site148-155ATP (UniProtKB | ChEBI)

GO annotations

all annotationsall molecular functionnucleotide bindingmolecular_functionnucleic acid bindingdna bindingchromatin bindingdna-binding transcription factor activityrna bindingcytoskeletal motor activitycatalytic activitynuclease activitysignaling receptor bindingstructural molecule activitytransporter activitybindingprotein bindingtranslation factor activity, rna bindinglipid bindingkinase activitytransferase activityhydrolase activityoxygen bindingenzyme regulator activitycarbohydrate bindingsignaling receptor activitytranslation regulator activitytranscription regulator activityother molecular functionall biological processcarbohydrate metabolic processgeneration of precursor metabolites and energynucleobase-containing compound metabolic processdna metabolic processtranslationlipid metabolic processtransportresponse to stresscell cyclecell communicationsignal transductioncell-cell signalingmulticellular organism developmentcircadian rhythmbiological_processmetabolic processcatabolic processbiosynthetic processresponse to light stimulusresponse to external stimulustropismresponse to biotic stimulusresponse to abiotic stimulusresponse to endogenous stimulusembryo developmentpost-embryonic developmentfruit ripeningabscissionpollinationflower developmentcellular processprogrammed cell deathphotosynthesiscellular component organizationcell growthprotein metabolic processcellular homeostasissecondary metabolic processreproductive processcell differentiationprotein modification processgrowthepigenetic regulation of gene expressionresponse to chemicalanatomical structure developmentregulation of molecular functionother biological processall cellular componentcellular_componentextracellular regioncell wallintracellular anatomical structurenucleusnuclear envelopenucleoplasmnucleoluscytoplasmmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuscytosolribosomecytoskeletonplasma membranechloroplastplastidthylakoidmembraneexternal encapsulating structureother cellular component
Cell color indicative of number of GO terms
AspectTerm
Cellular Componentchloroplast
Cellular Componentcytoplasm
Molecular FunctionATP binding
Molecular FunctionATP hydrolysis activity
Molecular FunctionRNA binding
Molecular FunctionRNA helicase activity
Molecular Functionzinc ion binding
Biological Processchloroplast organization
Biological ProcessGroup II intron splicing
Biological Processribosome biogenesis

Keywords

Enzyme and pathway databases

Names & Taxonomy

Protein names

  • Recommended name
    DEAD-box ATP-dependent RNA helicase 3, chloroplastic
  • EC number

Gene names

    • ORF names
      OSJNBa0010E04.4
    • Ordered locus names
      Os03g0827700
      , LOC_Os03g61220

Organism names

  • Taxonomic identifier
  • Strain
    • cv. Nipponbare
  • Taxonomic lineage
    Eukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > Liliopsida > Poales > Poaceae > BOP clade > Oryzoideae > Oryzeae > Oryzinae > Oryza > Oryza sativa

Accessions

  • Primary accession
    Q0DM51
  • Secondary accessions
    • A0A0N7KIB7
    • B7EBF8
    • Q10B75
    • Q10B76
    • Q8SAX7

Proteomes

Subcellular Location

Keywords

PTM/Processing

Features

Showing features for transit peptide, chain, modified residue (large scale data).

TypeIDPosition(s)SourceDescription
Transit peptide1-62UniProtChloroplast
ChainPRO_000028247363-758UniProtDEAD-box ATP-dependent RNA helicase 3, chloroplastic
Modified residue (large scale data)691PTMeXchangePhosphoserine
Modified residue (large scale data)737PTMeXchangePhosphoserine

Proteomic databases

Interaction

Protein-protein interaction databases

Structure

Family & Domains

Features

Showing features for region, compositional bias, motif, domain, zinc finger.

TypeIDPosition(s)Description
Region71-97Disordered
Compositional bias74-97Acidic residues
Motif104-132Q motif
Domain135-311Helicase ATP-binding
Motif259-262DEAD box
Domain340-485Helicase C-terminal
Region625-737Disordered
Compositional bias667-699Basic and acidic residues
Compositional bias700-737Polar residues
Zinc finger740-757CCHC-type

Domain

The Q motif is unique to and characteristic of the DEAD box family of RNA helicases and controls ATP binding and hydrolysis.

Sequence similarities

Keywords

Phylogenomic databases

Family and domain databases

Sequence & Isoforms

Align isoforms (3)
  • Sequence status
    Complete
  • Sequence processing
    The displayed sequence is further processed into a mature form.

This entry describes 3 isoforms produced by Alternative splicing.

Q0DM51-1

This isoform has been chosen as the canonical sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

  • Length
    758
  • Mass (Da)
    81,615
  • Last updated
    2007-04-03 v2
  • Checksum
    E2E6486829E73467
MASLLTLPSLSLSNPSASAAAAGAGAAPSLRLRAAFRCWALRRAGGGRWAAAGAIASPNSVLSEHAFKRLQLSDEEEEEEEGAYGSDEEGVEAVGGGEGDEDELAIARLGLPEQLVSTLEKRGITHLFPIQRAVLIPALDGRDLIARAKTGTGKTLAFGIPMIKQLMEEDDGRSVRRGRIPRVLVLAPTRELAKQVEKEIKESAPKLSTVCVYGGVSYNVQQNALSRGVDVVVGTPGRIIDLINGGSLQLGEVKYLVLDEADQMLAVGFEEDVETILQQLPAERQSMLFSATMPGWVKKLSRRYLNNPLTIDLVGDQDEKLAEGIKLYAIPLTSTSKRTVLSDLITVYAKGGKTIVFTKTKRDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNSQRRTVRSLERDVGCRFDFISPPAIEDVLESSAEHVIATLRGVHTESIQYFIPAAERLQEELGPNALASALAHLSGFSQPPSSRSLISHEQGWVTLQLTRDPGYGRGFFSPRSVTGFLSDVSSAAADEVGKIFLTADEKVQGAVFDLPEEIARDLLSMELPPGNTITKVTKLPALQDDGPATDSYGRFSNSDRGFRNRRSRGGGSRGGRGGWDSDGEDRFRRGGRSFRSDNDSWSDDDFGGGRRSNRSSSFGGRGSSYGSRSSSSFGGRSSSFGSRDSSRSFSGACFNCGESGHRASDCPNK

Q0DM51-2

  • Name
    2
  • See also
    sequence in UniParc or sequence clusters in UniRef
  • Differences from canonical

Q0DM51-3

  • Name
    3
  • Note
    May be due to a competing acceptor splice site.
  • See also
    sequence in UniParc or sequence clusters in UniRef
  • Differences from canonical

Computationally mapped potential isoform sequences

There is 1 potential isoform mapped to this entry

View all
EntryEntry nameGene nameLength
A0A0P0W5N0A0A0P0W5N0_ORYSJOs03g0827700433

Sequence caution

The sequence BAF13687.1 differs from that shown. Reason: Erroneous gene model prediction
The sequence BAS87169.1 differs from that shown. Reason: Erroneous gene model prediction

Features

Showing features for alternative sequence, compositional bias.

TypeIDPosition(s)Description
Alternative sequenceVSP_0241621-161in isoform 2
Compositional bias74-97Acidic residues
Compositional bias667-699Basic and acidic residues
Compositional bias700-737Polar residues
Alternative sequenceVSP_024163735in isoform 3

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
AC096687
EMBL· GenBank· DDBJ
AAL79753.1
EMBL· GenBank· DDBJ
Genomic DNA
DP000009
EMBL· GenBank· DDBJ
ABF99667.1
EMBL· GenBank· DDBJ
Genomic DNA
DP000009
EMBL· GenBank· DDBJ
ABF99668.1
EMBL· GenBank· DDBJ
Genomic DNA
AP008209
EMBL· GenBank· DDBJ
BAF13687.1
EMBL· GenBank· DDBJ
Genomic DNA Sequence problems.
AP014959
EMBL· GenBank· DDBJ
BAS87169.1
EMBL· GenBank· DDBJ
Genomic DNA Sequence problems.
AK065849
EMBL· GenBank· DDBJ
BAG89705.1
EMBL· GenBank· DDBJ
mRNA

Genome annotation databases

Similar Proteins

Disclaimer

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