Q0DLB9 · RH17_ORYSJ
- ProteinDEAD-box ATP-dependent RNA helicase 17
- GeneRH17
- StatusUniProtKB reviewed (Swiss-Prot)
- Amino acids591 (go to sequence)
- Protein existenceEvidence at transcript level
- Annotation score4/5
Function
function
May play a role in organellar ribosome biogenesis and suppress 16S rRNA maturation.
Catalytic activity
- ATP + H2O = ADP + H+ + phosphate
Features
Showing features for binding site.
GO annotations
Aspect | Term | |
---|---|---|
Cellular Component | nucleus | |
Molecular Function | ATP binding | |
Molecular Function | ATP hydrolysis activity | |
Molecular Function | RNA binding | |
Molecular Function | RNA helicase activity | |
Biological Process | ribosome biogenesis |
Keywords
- Molecular function
- Biological process
- Ligand
Enzyme and pathway databases
Names & Taxonomy
Protein names
- Recommended nameDEAD-box ATP-dependent RNA helicase 17
- EC number
- Short namesOsRH17
Gene names
Organism names
- Strain
- Taxonomic lineageEukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > Liliopsida > Poales > Poaceae > BOP clade > Oryzoideae > Oryzeae > Oryzinae > Oryza > Oryza sativa
Accessions
- Primary accessionQ0DLB9
- Secondary accessions
Proteomes
Genome annotation databases
Subcellular Location
PTM/Processing
Features
Showing features for chain, modified residue (large scale data).
Type | ID | Position(s) | Source | Description | |||
---|---|---|---|---|---|---|---|
Chain | PRO_0000282495 | 1-591 | UniProt | DEAD-box ATP-dependent RNA helicase 17 | |||
Sequence: MAKKLGKSPVAKEEDKEGLFASCSFTDLGLHPTLCAHLQDKMGFQAPTRIQAQAIPVAMSGQHMLVKAATGTGKTLAYLAPIVHLLQMREPRVERTDGTFALVLVPTRELCLQVYGIAQQLVHRFHWLVPGYIMGGENRAKEKARLRKGISILIATPGRLLDHLQHTSSFVYPNMRWIVFDEADSILELGFGKALEDILEHLGSRNDTSNQNKNKMEPMKRQNLLLSATLNEKVNRLAKISLKNPVMIGLDEQNSSAHGKNHTSLLSDDEEEILEKHNVTVEQAVDDFKLPAQLVQRYVKVSCGSRLAILLTILKSLFERQLSHKVVVFLSTCDSVDFHHTVLSQLEWSPGLQLDTDKKQKFISCKVFRLHGNMDQDDRKKSFLGFSSEKSAILVSTDVAARGLDFPKVKCIIQYDSPGEASEYVHRVGRTARIGEKGEALLFLQPIETDYLRDLELHGASLTEYPLQKVLDSFPVNGQRLHKRKQISLDMHPWIMSLQRALESFVTSEDTTKKLARDAFCSWVRAYTAHRGELKKIFMVKKLHLGHVARSFGLKEQPSLLGRSHQVQLKKRKKEQKRERPAKRRKIPAKR | |||||||
Modified residue (large scale data) | 267 | PTMeXchange | Phosphoserine | ||||
Sequence: S |
Proteomic databases
Expression
Tissue specificity
Expressed in flowers and pollen grains.
Induction
Induced by auxin (NAA), abscisic acid (ABA) and jasmonate (JA).
Gene expression databases
Interaction
Protein-protein interaction databases
Structure
Family & Domains
Features
Showing features for motif, domain, region, compositional bias.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Motif | 23-52 | Q motif | ||||
Sequence: CSFTDLGLHPTLCAHLQDKMGFQAPTRIQA | ||||||
Domain | 55-248 | Helicase ATP-binding | ||||
Sequence: IPVAMSGQHMLVKAATGTGKTLAYLAPIVHLLQMREPRVERTDGTFALVLVPTRELCLQVYGIAQQLVHRFHWLVPGYIMGGENRAKEKARLRKGISILIATPGRLLDHLQHTSSFVYPNMRWIVFDEADSILELGFGKALEDILEHLGSRNDTSNQNKNKMEPMKRQNLLLSATLNEKVNRLAKISLKNPVMI | ||||||
Motif | 181-184 | DEAD box | ||||
Sequence: DEAD | ||||||
Domain | 293-482 | Helicase C-terminal | ||||
Sequence: QLVQRYVKVSCGSRLAILLTILKSLFERQLSHKVVVFLSTCDSVDFHHTVLSQLEWSPGLQLDTDKKQKFISCKVFRLHGNMDQDDRKKSFLGFSSEKSAILVSTDVAARGLDFPKVKCIIQYDSPGEASEYVHRVGRTARIGEKGEALLFLQPIETDYLRDLELHGASLTEYPLQKVLDSFPVNGQRLH | ||||||
Region | 562-591 | Disordered | ||||
Sequence: GRSHQVQLKKRKKEQKRERPAKRRKIPAKR | ||||||
Compositional bias | 566-591 | Basic residues | ||||
Sequence: QVQLKKRKKEQKRERPAKRRKIPAKR |
Domain
The Q motif is unique to and characteristic of the DEAD box family of RNA helicases and controls ATP binding and hydrolysis.
Sequence similarities
Belongs to the DEAD box helicase family. DDX31/DBP7 subfamily.
Phylogenomic databases
Family and domain databases
Sequence & Isoform
- Sequence statusComplete
This entry describes 2 isoforms produced by Alternative splicing.
Q0DLB9-1
This isoform has been chosen as the canonical sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.
- Name1
- Length591
- Mass (Da)66,904
- Last updated2007-04-03 v2
- ChecksumD0ACEFE4AD816DF1
Q0DLB9-2
- Name2
Sequence caution
Features
Showing features for sequence conflict, alternative sequence, compositional bias.
Keywords
- Coding sequence diversity
- Technical term
Sequence databases
Nucleotide Sequence | Protein Sequence | Molecule Type | Status | |
---|---|---|---|---|
AC079022 EMBL· GenBank· DDBJ | AAK73153.1 EMBL· GenBank· DDBJ | Genomic DNA | Sequence problems. | |
AC079356 EMBL· GenBank· DDBJ | AAU44200.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AP008211 EMBL· GenBank· DDBJ | BAF16354.2 EMBL· GenBank· DDBJ | Genomic DNA | ||
AP014961 EMBL· GenBank· DDBJ | BAS91914.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AP014961 EMBL· GenBank· DDBJ | BAS91915.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
CM000142 EMBL· GenBank· DDBJ | EEE62071.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AK060179 EMBL· GenBank· DDBJ | - | mRNA | No translation available. | |
AK066175 EMBL· GenBank· DDBJ | - | mRNA | No translation available. |