P56779 · PSBE_ARATH

Function

function

This b-type cytochrome is tightly associated with the reaction center of photosystem II (PSII). PSII is a light-driven water:plastoquinone oxidoreductase that uses light energy to abstract electrons from H2O, generating O2 and a proton gradient subsequently used for ATP formation. It consists of a core antenna complex that captures photons, and an electron transfer chain that converts photonic excitation into a charge separation.

Cofactor

heme b (UniProtKB | Rhea| CHEBI:60344 )

Note: With its partner (PsbF) binds heme. PSII binds additional chlorophylls, carotenoids and specific lipids.

Features

Showing features for binding site.

1831020304050607080
MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF
TypeIDPosition(s)Description
Binding site23Fe (UniProtKB | ChEBI) of heme (UniProtKB | ChEBI); ligand shared with beta subunit; axial binding residue

GO annotations

all annotationsall molecular functionnucleotide bindingmolecular_functionnucleic acid bindingdna bindingchromatin bindingdna-binding transcription factor activityrna bindingcytoskeletal motor activitycatalytic activitynuclease activitysignaling receptor bindingstructural molecule activitytransporter activitybindingprotein bindingtranslation factor activity, rna bindinglipid bindingkinase activitytransferase activityhydrolase activityoxygen bindingenzyme regulator activitycarbohydrate bindingsignaling receptor activitytranslation regulator activitytranscription regulator activityother molecular functionall biological processcarbohydrate metabolic processgeneration of precursor metabolites and energynucleobase-containing compound metabolic processdna metabolic processtranslationlipid metabolic processtransportresponse to stresscell cyclecell communicationsignal transductioncell-cell signalingmulticellular organism developmentcircadian rhythmbiological_processmetabolic processcatabolic processbiosynthetic processresponse to light stimulusresponse to external stimulustropismresponse to biotic stimulusresponse to abiotic stimulusresponse to endogenous stimulusembryo developmentpost-embryonic developmentfruit ripeningabscissionpollinationflower developmentcellular processprogrammed cell deathphotosynthesiscellular component organizationcell growthprotein metabolic processcellular homeostasissecondary metabolic processreproductive processcell differentiationprotein modification processgrowthepigenetic regulation of gene expressionresponse to chemicalanatomical structure developmentregulation of molecular functionother biological processall cellular componentcellular_componentextracellular regioncell wallintracellular anatomical structurenucleusnuclear envelopenucleoplasmnucleoluscytoplasmmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuscytosolribosomecytoskeletonplasma membranechloroplastplastidthylakoidmembraneexternal encapsulating structureother cellular component
Cell color indicative of number of GO terms
AspectTerm
Cellular Componentchloroplast thylakoid membrane
Cellular Componentphotosystem II reaction center
Molecular Functionelectron transfer activity
Molecular Functionheme binding
Molecular Functioniron ion binding
Biological Processphotosynthetic electron transport chain

Keywords

Enzyme and pathway databases

Names & Taxonomy

Protein names

  • Recommended name
    Cytochrome b559 subunit alpha
  • Alternative names
    • PSII reaction center subunit V

Gene names

    • Name
      psbE
    • Ordered locus names
      AtCg00580

Encoded on

  • Chloroplast

Organism names

  • Taxonomic identifier
  • Strain
    • cv. Columbia
  • Taxonomic lineage
    Eukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > eudicotyledons > Gunneridae > Pentapetalae > rosids > malvids > Brassicales > Brassicaceae > Camelineae > Arabidopsis

Accessions

  • Primary accession
    P56779
  • Secondary accessions
    • Q8HS06

Proteomes

Organism-specific databases

Subcellular Location

Features

Showing features for transmembrane.

TypeIDPosition(s)Description
Transmembrane21-35Helical

Keywords

PTM/Processing

Features

Showing features for chain.

TypeIDPosition(s)Description
ChainPRO_00002002981-83Cytochrome b559 subunit alpha

Proteomic databases

Expression

Gene expression databases

Interaction

Subunit

Heterodimer of an alpha subunit and a beta subunit. PSII is composed of 1 copy each of membrane proteins PsbA, PsbB, PsbC, PsbD, PsbE, PsbF, PsbH, PsbI, PsbJ, PsbK, PsbL, PsbM, PsbT, PsbX, PsbY, PsbZ, Psb30/Ycf12, at least 3 peripheral proteins of the oxygen-evolving complex and a large number of cofactors. It forms dimeric complexes.

Protein-protein interaction databases

Family & Domains

Sequence similarities

Belongs to the PsbE/PsbF family.

Keywords

Phylogenomic databases

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    83
  • Mass (Da)
    9,387
  • Last updated
    2007-01-23 v4
  • Checksum
    F1E3918BCABACDDE
MSGSTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQGIPLITGRFDSLEQLDEFSRSF

RNA Editing

Edited at position 72

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
AP000423
EMBL· GenBank· DDBJ
BAA84402.1
EMBL· GenBank· DDBJ
Genomic DNA Sequence problems.
AV525419
EMBL· GenBank· DDBJ
-mRNA No translation available.
AV527712
EMBL· GenBank· DDBJ
-mRNA No translation available.
BE525291
EMBL· GenBank· DDBJ
-mRNA No translation available.
AY007473
EMBL· GenBank· DDBJ
AAG26974.1
EMBL· GenBank· DDBJ
Genomic DNA Sequence problems.

Genome annotation databases

Similar Proteins

Disclaimer

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