P42793 · RM05_ARATH
- ProteinLarge ribosomal subunit protein uL5m
- GeneRPL5
- StatusUniProtKB reviewed (Swiss-Prot)
- Amino acids185 (go to sequence)
- Protein existenceEvidence at protein level
- Annotation score3/5
Function
Miscellaneous
A stretch of 270 kb of the mitochondrial genome is duplicated within the centromere of chromosome 2 resulting in the duplication of the gene. The expression of this duplicated gene (At2g07725) is demonstrated.
GO annotations
all annotations | all molecular function | nucleotide binding | molecular_function | nucleic acid binding | dna binding | chromatin binding | dna-binding transcription factor activity | rna binding | cytoskeletal motor activity | catalytic activity | nuclease activity | signaling receptor binding | structural molecule activity | transporter activity | binding | protein binding | translation factor activity, rna binding | lipid binding | kinase activity | transferase activity | hydrolase activity | oxygen binding | enzyme regulator activity | carbohydrate binding | signaling receptor activity | translation regulator activity | transcription regulator activity | other molecular function | all biological process | carbohydrate metabolic process | generation of precursor metabolites and energy | nucleobase-containing compound metabolic process | dna metabolic process | translation | lipid metabolic process | transport | response to stress | cell cycle | cell communication | signal transduction | cell-cell signaling | multicellular organism development | circadian rhythm | biological_process | metabolic process | catabolic process | biosynthetic process | response to light stimulus | response to external stimulus | tropism | response to biotic stimulus | response to abiotic stimulus | response to endogenous stimulus | embryo development | post-embryonic development | fruit ripening | abscission | pollination | flower development | cellular process | programmed cell death | photosynthesis | cellular component organization | cell growth | protein metabolic process | cellular homeostasis | secondary metabolic process | reproductive process | cell differentiation | protein modification process | growth | epigenetic regulation of gene expression | response to chemical | anatomical structure development | regulation of molecular function | other biological process | all cellular component | cellular_component | extracellular region | cell wall | intracellular anatomical structure | nucleus | nuclear envelope | nucleoplasm | nucleolus | cytoplasm | mitochondrion | lysosome | endosome | vacuole | peroxisome | endoplasmic reticulum | golgi apparatus | cytosol | ribosome | cytoskeleton | plasma membrane | chloroplast | plastid | thylakoid | membrane | external encapsulating structure | other cellular component | |||
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Aspect | Term | |
---|---|---|
Cellular Component | cytosolic large ribosomal subunit | |
Cellular Component | mitochondrion | |
Molecular Function | RNA binding | |
Molecular Function | structural constituent of ribosome | |
Biological Process | translation |
Keywords
- Molecular function
Names & Taxonomy
Protein names
- Recommended nameLarge ribosomal subunit protein uL5m
- Alternative names
Gene names
Encoded on
- Mitochondrion
Organism names
- Strains
- Taxonomic lineageEukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > eudicotyledons > Gunneridae > Pentapetalae > rosids > malvids > Brassicales > Brassicaceae > Camelineae > Arabidopsis
Accessions
- Primary accessionP42793
- Secondary accessions
Proteomes
Organism-specific databases
Subcellular Location
PTM/Processing
Features
Showing features for chain.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Chain | PRO_0000125073 | 1-185 | Large ribosomal subunit protein uL5m | |||
Sequence: MFPLNFHYEDVLRQDLLLKLNYANVMEVPGLCEIRVVPKAPYNFIIKNGKLAMEIPCGQKFIQTQRGSTGKSFRSNPFLGSNKDKGYVSDLARQSTLRGHGMSNFLVRILTVMSLLDFPVEIRKNSIQFSMETEFCEFSPELEDHFEIFEHIRGFNVTIITSANTQDETLLLWSGFLQKDEGETQ |
Proteomic databases
Expression
Gene expression databases
Structure
Family & Domains
Sequence similarities
Belongs to the universal ribosomal protein uL5 family.
Phylogenomic databases
Family and domain databases
Sequence
- Sequence statusComplete
- Length185
- Mass (Da)21,235
- Last updated1995-11-01 v1
- ChecksumCB934DC964D9117F
Computationally mapped potential isoform sequences
There is 1 potential isoform mapped to this entry
Entry | Entry name | Gene name | Length | ||
---|---|---|---|---|---|
Q6NMS1 | Q6NMS1_ARATH | rpl5 | 185 |
Features
Showing features for sequence conflict.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Sequence conflict | 92-98 | in Ref. 7; CAA46239 | ||||
Sequence: ARQSTLR → STTKHSP |
RNA Editing
Edited at positions 12 16 20 22 31 57 106 110 171
Keywords
- Coding sequence diversity
- Technical term
Sequence databases
Nucleotide Sequence | Protein Sequence | Molecule Type | Status | |
---|---|---|---|---|
X67736 EMBL· GenBank· DDBJ | CAA47967.1 EMBL· GenBank· DDBJ | Genomic DNA | Sequence problems. | |
Y08501 EMBL· GenBank· DDBJ | CAA69765.3 EMBL· GenBank· DDBJ | Genomic DNA | Sequence problems. | |
BK010421 EMBL· GenBank· DDBJ | DAB41507.2 EMBL· GenBank· DDBJ | Genomic DNA | ||
AC006225 EMBL· GenBank· DDBJ | AAM15173.1 EMBL· GenBank· DDBJ | Genomic DNA | Sequence problems. | |
BT010679 EMBL· GenBank· DDBJ | AAR20736.1 EMBL· GenBank· DDBJ | mRNA | Sequence problems. | |
X65123 EMBL· GenBank· DDBJ | CAA46239.1 EMBL· GenBank· DDBJ | Genomic DNA | Sequence problems. |