P0DA72 · DNLJ_STRP3

Function

function

DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA.

Catalytic activity

  • NAD+ + (deoxyribonucleotide)n-3'-hydroxyl + 5'-phospho-(deoxyribonucleotide)m = (deoxyribonucleotide)n+m + AMP + beta-nicotinamide D-nucleotide.
    EC:6.5.1.2 (UniProtKB | ENZYME | Rhea)

Cofactor

Mg2+ (UniProtKB | Rhea| CHEBI:18420 )

Mn2+ (UniProtKB | Rhea| CHEBI:29035 )

Features

Showing features for binding site, active site.

165250100150200250300350400450500550600650
TypeIDPosition(s)Description
Binding site29-33NAD+ (UniProtKB | ChEBI)
Binding site78-79NAD+ (UniProtKB | ChEBI)
Binding site107NAD+ (UniProtKB | ChEBI)
Active site109N6-AMP-lysine intermediate
Binding site130NAD+ (UniProtKB | ChEBI)
Binding site164NAD+ (UniProtKB | ChEBI)
Binding site278NAD+ (UniProtKB | ChEBI)
Binding site302NAD+ (UniProtKB | ChEBI)
Binding site395Zn2+ (UniProtKB | ChEBI)
Binding site398Zn2+ (UniProtKB | ChEBI)
Binding site413Zn2+ (UniProtKB | ChEBI)
Binding site418Zn2+ (UniProtKB | ChEBI)

GO annotations

AspectTerm
Molecular FunctionDNA binding
Molecular FunctionDNA ligase (NAD+) activity
Molecular Functionmetal ion binding
Biological ProcessDNA repair
Biological ProcessDNA replication

Keywords

Enzyme and pathway databases

Names & Taxonomy

Protein names

  • Recommended name
    DNA ligase
  • EC number
  • Alternative names
    • Polydeoxyribonucleotide synthase [NAD(+)]

Gene names

    • Name
      ligA
    • Ordered locus names
      SpyM3_0491

Organism names

Accessions

  • Primary accession
    P0DA72
  • Secondary accessions
    • Q79WQ0
    • Q8K831

Proteomes

PTM/Processing

Features

Showing features for chain.

TypeIDPosition(s)Description
ChainPRO_00003134631-652DNA ligase

Structure

Family & Domains

Features

Showing features for domain.

TypeIDPosition(s)Description
Domain577-652BRCT

Sequence similarities

Belongs to the NAD-dependent DNA ligase family. LigA subfamily.

Phylogenomic databases

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    652
  • Mass (Da)
    72,392
  • Last updated
    2011-07-27 v1
  • Checksum
    C3617947FF897BB4
MKKRIKELTDLLNRYRYDYYTKDAPSVSDSDYDKLYRELVTLEQSYPEYVLQDSPTQQVGGTILKGFEKYRHQYPLFSLQDAFSREELDAFDKRVKAEFPNATYLAELKIDGLSISLSYENGFLQVGATRGDGNIGENITENIKKIKDIPHQLSEPLTITVRGEAYMSRQSFKAINEGRQENGETEFANPRNAAAGTLRQLDTAVVAKRQLATFLYQEVSPTARNQQNEVLAELADLGFSVNPYYQLTSSMDEIWDFIKTIEAKRDQLAYDIDGVVIKVNSLAMQEELGFTVKAPRWAIAYKFPAEEKEAEILSVDWTVGRTGVVTPTANLTPVQLAGTTVSRATLHNVDYIAEKDIRIGDTVIVYKAGDIIPAVLNVVMSKRNQQEVMLIPKLCPSCGSELVHFEDEVALRCINPLCPSLIQRSLEHFASRDAMNITGLGPAIVEKLFLAGFVHDVADIYQLTKEDFMQLDGIKEKSADKLLAAIEASKSNSAEKLLFGLGIRHIGSKVSRLILEVYGDISALLTAKEEEIARIDGLGSTIAQSLTQYFEQKTAAILVDELKTAGVNMHYSGQKVNSDAALFGLTVVLTGKLNQLNRNEAKDKLEALGAKVTGSVSKKTDLVIAGSDAGSKLEKAKSLGIRIEDEDWLRQL

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
AE014074
EMBL· GenBank· DDBJ
AAM79098.1
EMBL· GenBank· DDBJ
Genomic DNA

Genome annotation databases

Similar Proteins

Disclaimer

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