P0CW02 · LY6C1_MOUSE

  • Protein
    Lymphocyte antigen 6C1
  • Gene
    Ly6c1
  • Status
    UniProtKB reviewed (Swiss-Prot)
  • Amino acids
  • Protein existence
    Evidence at transcript level
  • Annotation score
    2/5

Function

GO annotations

all annotationsall molecular functionvirus receptor activitydna bindingrna bindingcytoskeletal motor activitycatalytic activitygtpase activitystructural molecule activitytransporter activitycytoskeletal protein bindinglipid bindingcyclase activityantioxidant activityoxidoreductase activitytransferase activityhydrolase activitylyase activityisomerase activityligase activityprotein tag activitycargo receptor activityhistone bindingprotein folding chaperonetranslation regulator activitynutrient reservoir activityreceptor ligand activitymolecular transducer activitymolecular adaptor activitytoxin activitycell adhesion mediator activitymolecular function regulator activityvirus coreceptor activitycatalytic activity, acting on a proteincatalytic activity, acting on dnacatalytic activity, acting on rnamolecular carrier activitytranscription regulator activitygeneral transcription initiation factor activitymolecular sensor activitymolecular sequestering activityatp-dependent activityother molecular functionall biological processmitotic cell cyclecytokinesiscytoplasmic translationimmune system processmuscle system processcirculatory system processrenal system processrespiratory system processcarbohydrate metabolic processgeneration of precursor metabolites and energydna replicationdna repairdna recombinationchromatin organizationdna-templated transcriptionregulation of dna-templated transcriptiontrna metabolic processprotein foldingprotein glycosylationamino acid metabolic processmodified amino acid metabolic processlipid metabolic processvitamin metabolic processsulfur compound metabolic processintracellular protein transportnucleocytoplasmic transportautophagyinflammatory responsemitochondrion organizationcytoskeleton organizationmicrotubule-based movementperoxisome organizationlysosome organizationchromosome segregationcell adhesionestablishment or maintenance of cell polarityprogrammed cell deathphotosynthesismrna metabolic processsnrna metabolic processvesicle-mediated transportreproductive processdigestive system processsignalingcell differentiationprotein catabolic processextracellular matrix organizationregulatory ncrna-mediated gene silencingtelomere organizationcell junction organizationwound healingribosome biogenesiscilium organizationanatomical structure developmentcell motilitynervous system processendocrine processprotein maturationtransmembrane transportnucleobase-containing small molecule metabolic processhepaticobiliary system processmembrane organizationprotein-containing complex assemblycell wall organization or biogenesisnitrogen cycle metabolic processprotein localization to plasma membranedefense response to other organismdetoxificationmeiotic nuclear divisionmitotic nuclear divisionmitochondrial gene expressioncarbohydrate derivative metabolic processother biological processall cellular componentnuclear chromosomeextracellular regionextracellular spacecell wallnucleusnuclear envelopenucleoplasmchromosomenucleolusmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuslipid dropletmicrotubule organizing centercytosolribosomecytoskeletonplasma membraneciliumplastidthylakoidexternal encapsulating structureextracellular matrixcytoplasmic vesicleorganelleother cellular component
Cell color indicative of number of GO terms
AspectTerm
Cellular Componentcell surface
Cellular Componentexternal side of plasma membrane

Names & Taxonomy

Protein names

  • Recommended name
    Lymphocyte antigen 6C1
  • Short names
    Ly-6C1

Gene names

    • Name
      Ly6c1

Organism names

  • Taxonomic identifier
  • Strains
    • C57BL/6J
    • NOD
    • FVB/N
  • Taxonomic lineage
    Eukaryota > Metazoa > Chordata > Craniata > Vertebrata > Euteleostomi > Mammalia > Eutheria > Euarchontoglires > Glires > Rodentia > Myomorpha > Muroidea > Muridae > Murinae > Mus > Mus

Accessions

  • Primary accession
    P0CW02
  • Secondary accessions
    • P09568
    • Q58E40
    • Q8C2D8
    • Q91XG0

Proteomes

Organism-specific databases

Subcellular Location

Keywords

PTM/Processing

Features

Showing features for signal, chain, disulfide bond, lipidation, propeptide.

TypeIDPosition(s)Description
Signal1-26
ChainPRO_000040803327-109Lymphocyte antigen 6C1
Disulfide bond29↔53
Disulfide bond32↔41
Disulfide bond46↔74
Disulfide bond78↔95
Disulfide bond96↔101
Lipidation109GPI-anchor amidated glycine
PropeptidePRO_0000408034110-131Removed in mature form

Keywords

Proteomic databases

PTM databases

Expression

Gene expression databases

Interaction

Miscellaneous

Family & Domains

Features

Showing features for domain.

TypeIDPosition(s)Description
Domain27-115UPAR/Ly6

Keywords

Phylogenomic databases

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Sequence processing
    The displayed sequence is further processed into a mature form.
  • Length
    131
  • Mass (Da)
    14,193
  • Last updated
    2011-05-03 v1
  • Checksum
    36DAB8CB8F137CB0
MDTSHTTKSCVLILLVALLCAERAQGLQCYECYGVPIETSCPAVTCRASDGFCIAQNIELIEDSQRRKLKTRQCLSFCPAGVPIRDPNIRERTSCCSEDLCNAAVPTAGSTWTMAGVLLFSLSSVVLQTLL

Computationally mapped potential isoform sequences

There are 4 potential isoforms mapped to this entry

View all
EntryEntry nameGene nameLength
A0A087WNZ5A0A087WNZ5_MOUSELy6c1147
A0A087WPW7A0A087WPW7_MOUSELy6c178
A0A087WRP7A0A087WRP7_MOUSELy6c1111
A0A087WRG9A0A087WRG9_MOUSELy6c181

Features

Showing features for sequence conflict.

TypeIDPosition(s)Description
Sequence conflict3-4in Ref. 1; AAA39469
Sequence conflict6in Ref. 1; AAA39469
Sequence conflict11in Ref. 1; AAA39469
Sequence conflict22in Ref. 1; AAA39469 and 2; BAC40570

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
M21734
EMBL· GenBank· DDBJ
AAA39469.1
EMBL· GenBank· DDBJ
Genomic DNA
M21771
EMBL· GenBank· DDBJ
AAA39469.1
EMBL· GenBank· DDBJ
Genomic DNA
M21733
EMBL· GenBank· DDBJ
AAA39469.1
EMBL· GenBank· DDBJ
Genomic DNA
AK088782
EMBL· GenBank· DDBJ
BAC40570.1
EMBL· GenBank· DDBJ
mRNA
AK143577
EMBL· GenBank· DDBJ
BAE25446.1
EMBL· GenBank· DDBJ
mRNA
BC010764
EMBL· GenBank· DDBJ
AAH10764.1
EMBL· GenBank· DDBJ
mRNA

Genome annotation databases

Similar Proteins

Disclaimer

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