Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana.Lin X., Kaul S., Rounsley S.D., Shea T.P., Benito M.-I., Town C.D., Fujii C.Y., Mason T.M., Bowman C.L.[...], Venter J.C.View abstractCited forNUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]Straincv. ColumbiaCategoriesSequencesSourceUniProtKB reviewed (Swiss-Prot)PubMedEurope PMCNature 402:761-768 (1999)Cited in99+99+Mapped to1
Araport11: a complete reannotation of the Arabidopsis thaliana reference genome.Cheng C.Y., Krishnakumar V., Chan A.P., Thibaud-Nissen F., Schobel S., Town C.D.View abstractCited forGENOME REANNOTATIONStraincv. ColumbiaCategoriesSequencesSourceUniProtKB reviewed (Swiss-Prot)PubMedEurope PMCPlant J. 89:789-804 (2017)Cited in99+99+
Empirical analysis of transcriptional activity in the Arabidopsis genome.Yamada K., Lim J., Dale J.M., Chen H., Shinn P., Palm C.J., Southwick A.M., Wu H.C., Kim C.J.[...], Ecker J.R.View abstractCited forNUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]Straincv. ColumbiaCategoriesSequencesSourceUniProtKB reviewed (Swiss-Prot)PubMedEurope PMCScience 302:842-846 (2003)Cited in99+Mapped to2
Uridylation prevents 3' trimming of oligoadenylated mRNAs.Sement F.M., Ferrier E., Zuber H., Merret R., Alioua M., Deragon J.M., Bousquet-Antonelli C., Lange H., Gagliardi D.View abstractCited forFUNCTION, CATALYTIC ACTIVITY, MUTAGENESIS OF ASP-491 AND ASP-493, SUBCELLULAR LOCATIONStraincv. ColumbiaCategoriesFunction, Phenotypes & Variants, Subcellular LocationSourceUniProtKB reviewed (Swiss-Prot)PubMedEurope PMCNucleic Acids Res. 41:7115-7127 (2013)Cited in1
Synergistic and independent actions of multiple terminal nucleotidyl transferases in the 3' tailing of small RNAs in Arabidopsis.Wang X., Zhang S., Dou Y., Zhang C., Chen X., Yu B., Ren G.View abstractCited forFUNCTION, MUTAGENESIS OF PRO-618, SUBCELLULAR LOCATION, INTERACTION WITH AGO1CategoriesFunction, Interaction, Phenotypes & Variants, Subcellular LocationSourceUniProtKB reviewed (Swiss-Prot)PubMedEurope PMCPLoS Genet. 11:E1005091-E1005091 (2015)Cited in3Mapped to2
Distinct and cooperative activities of HESO1 and URT1 nucleotidyl transferases in microRNA turnover in Arabidopsis.Tu B., Liu L., Xu C., Zhai J., Li S., Lopez M.A., Zhao Y., Yu Y., Ramachandran V.[...], Chen X.View abstractCited forFUNCTION, CATALYTIC ACTIVITY, ACTIVITY REGULATIONCategoriesFunctionSourceUniProtKB reviewed (Swiss-Prot)PubMedEurope PMCPLoS Genet. 11:E1005119-E1005119 (2015)Cited in2Mapped to2
Uridylation and PABP cooperate to repair mRNA deadenylated ends in Arabidopsis.Zuber H., Scheer H., Ferrier E., Sement F.M., Mercier P., Stupfler B., Gagliardi D.View abstractCited forFUNCTIONCategoriesFunctionSourceUniProtKB reviewed (Swiss-Prot)PubMedEurope PMCCell Rep. 14:2707-2717 (2016)Cited in2Mapped to1
Respective contributions of URT1 and HESO1 to the uridylation of 5' fragments produced from RISC-cleaved mRNAs.Zuber H., Scheer H., Joly A.C., Gagliardi D.View abstractCited forFUNCTIONCategoriesFunctionSourceUniProtKB reviewed (Swiss-Prot)PubMedEurope PMCFront. Plant Sci. 9:1438-1438 (2018)Cited in2Mapped to4
A genetics screen highlights emerging roles for CPL3, RST1 and URT1 in RNA metabolism and silencing.Li T., Natran A., Chen Y., Vercruysse J., Wang K., Gonzalez N., Dubois M., Inze D.View abstractCited forFUNCTIONCategoriesFunctionSourceUniProtKB reviewed (Swiss-Prot)PubMedEurope PMCNat. Plants 5:539-550 (2019)Cited in3Mapped to5
The TUTase URT1 connects decapping activators and prevents the accumulation of excessively deadenylated mRNAs to avoid siRNA biogenesis.Scheer H., de Almeida C., Ferrier E., Simonnot Q., Poirier L., Pflieger D., Sement F.M., Koechler S., Piermaria C.[...], Gagliardi D.View abstractCited forFUNCTIONCategoriesFunctionSourceUniProtKB reviewed (Swiss-Prot)PubMedEurope PMCNat. Commun. 12:1298-1298 (2021)Cited in1Mapped to4
Crystal structure of Arabidopsis terminal uridylyl transferase URT1.Zhu L., Hu Q., Cheng L., Jiang Y., Lv M., Liu Y., Li F., Shi Y., Gong Q.View abstractCited forX-RAY CRYSTALLOGRAPHY (1.98 ANGSTROMS) OF 410-764 IN COMPLEX WITH UTPCategoriesInteraction, StructureSourceUniProtKB reviewed (Swiss-Prot)PubMedEurope PMCBiochem. Biophys. Res. Commun. 524:490-496 (2020)Cited in1Mapped to1
An extensive survey of phytoviral RNA 3' uridylation identifies extreme variations and virus-specific patterns.Joly A.C., Garcia S., Hily J.M., Koechler S., Demangeat G., Garcia D., Vigne E., Lemaire O., Zuber H., Gagliardi D.View abstractSourceTAIR: AT2G45620PubMedEurope PMCPlant Physiol 193:271-290 (2023)Mapped to3
Molecular mechanism underlying the di-uridylation activity of Arabidopsis TUTase URT1.Hu Q., Yang H., Li M., Zhu L., Lv M., Li F., Zhang Z., Ren G., Gong Q.View abstractAnnotationMolecular mechanism underlying the di-uridylation activity of Arabidopsis TUTase URT1.CategoriesStructureSourceGeneRif: 819170, PDB: 7XS4, pGenN:36177876, TAIR: AT2G45620PubMedEurope PMCNucleic Acids Res 50:10614-10625 (2022)Mapped to2
Uridylation and the SKI complex orchestrate the Calvin cycle of photosynthesis through RNA surveillance of <i>TKL1</i> in Arabidopsis.Wang X., Kong W., Wang Y., Wang J., Zhong L., Lao K., Dong X., Zhang D., Huang H.[...], Ren G.View abstractCategoriesFunctionSourceTAIR: AT2G45620PubMedEurope PMCProc Natl Acad Sci U S A 119:e2205842119-e2205842119 (2022)Mapped to11
Degradation of unmethylated miRNA/miRNA*s by a DEDDy-type 3' to 5' exoribonuclease Atrimmer 2 in <i>Arabidopsis</i>.Wang X., Wang Y., Dou Y., Chen L., Wang J., Jiang N., Guo C., Yao Q., Wang C.[...], Ren G.View abstractCategoriesFunction, Phenotypes & VariantsSourceTAIR: AT2G45620PubMedEurope PMCProc Natl Acad Sci U S A 115:E6659-E6667 (2018)Mapped to10
Endogenous Arabidopsis messenger RNAs transported to distant tissues.Thieme C.J., Rojas-Triana M., Stecyk E., Schudoma C., Zhang W., Yang L., Minambres M., Walther D., Schulze W.X.[...], Kragler F.View abstractCategoriesExpressionSourceTAIR: AT2G45620PubMedEurope PMCNat. Plants 1:15025-15025 (2015)Cited in1Mapped to99+
Polyadenylation-assisted RNA degradation processes in plants.Lange H., Sement F.M., Canaday J., Gagliardi D.View abstractCategoriesNamesSourceTAIR: AT2G45620PubMedEurope PMCTrends Plant Sci 14:497-504 (2009)Mapped to12
Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.Ascencio-Ibanez J.T., Sozzani R., Lee T.J., Chu T.M., Wolfinger R.D., Cella R., Hanley-Bowdoin L.View abstractCategoriesFunction, ExpressionSourceTAIR: AT2G45620PubMedEurope PMCPlant Physiol 148:436-454 (2008)Mapped to99+
Genome-based analysis of Chlamydomonas reinhardtii exoribonucleases and poly(A) polymerases predicts unexpected organellar and exosomal features.Zimmer S.L., Fei Z., Stern D.B.View abstractCategoriesSubcellular LocationSourceTAIR: AT2G45620PubMedEurope PMCGenetics 179:125-136 (2008)Cited in3Mapped to13
Conservation and divergence of microRNAs in Populus.Barakat A., Wall P.K., Diloreto S., Depamphilis C.W., Carlson J.E.View abstractCategoriesNamesSourceTAIR: AT2G45620PubMedEurope PMCBMC Genomics 8:481-481 (2007)Mapped to56
Natural genetic variation in whole-genome expression in Arabidopsis thaliana: the impact of physiological QTL introgression.Juenger T.E., Wayne T., Boles S., Symonds V.V., McKay J., Coughlan S.J.View abstractCategoriesSequencesSourceTAIR: AT2G45620PubMedEurope PMCMol Ecol 15:1351-1365 (2006)Mapped to99+