O04647 · PP399_ARATH
- ProteinPentatricopeptide repeat-containing protein At5g27270
- GeneEMB976
- StatusUniProtKB reviewed (Swiss-Prot)
- Amino acids1038 (go to sequence)
- Protein existenceEvidence at transcript level
- Annotation score3/5
Function
GO annotations
all annotations | all molecular function | nucleotide binding | molecular_function | nucleic acid binding | dna binding | chromatin binding | dna-binding transcription factor activity | rna binding | cytoskeletal motor activity | catalytic activity | nuclease activity | signaling receptor binding | structural molecule activity | transporter activity | binding | protein binding | translation factor activity, rna binding | lipid binding | kinase activity | transferase activity | hydrolase activity | oxygen binding | enzyme regulator activity | carbohydrate binding | signaling receptor activity | translation regulator activity | transcription regulator activity | other molecular function | all biological process | carbohydrate metabolic process | generation of precursor metabolites and energy | nucleobase-containing compound metabolic process | dna metabolic process | translation | lipid metabolic process | transport | response to stress | cell cycle | cell communication | signal transduction | cell-cell signaling | multicellular organism development | circadian rhythm | biological_process | metabolic process | catabolic process | biosynthetic process | response to light stimulus | response to external stimulus | tropism | response to biotic stimulus | response to abiotic stimulus | response to endogenous stimulus | embryo development | post-embryonic development | fruit ripening | abscission | pollination | flower development | cellular process | programmed cell death | photosynthesis | cellular component organization | cell growth | protein metabolic process | cellular homeostasis | secondary metabolic process | reproductive process | cell differentiation | protein modification process | growth | epigenetic regulation of gene expression | response to chemical | anatomical structure development | regulation of molecular function | other biological process | all cellular component | cellular_component | extracellular region | cell wall | intracellular anatomical structure | nucleus | nuclear envelope | nucleoplasm | nucleolus | cytoplasm | mitochondrion | lysosome | endosome | vacuole | peroxisome | endoplasmic reticulum | golgi apparatus | cytosol | ribosome | cytoskeleton | plasma membrane | chloroplast | plastid | thylakoid | membrane | external encapsulating structure | other cellular component | |||
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Aspect | Term | |
---|---|---|
Cellular Component | chloroplast stroma | |
Molecular Function | mRNA binding | |
Biological Process | chloroplast mRNA processing | |
Biological Process | Group II intron splicing |
Names & Taxonomy
Protein names
- Recommended namePentatricopeptide repeat-containing protein At5g27270
- Alternative names
Gene names
Organism names
- Strain
- Taxonomic lineageEukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > eudicotyledons > Gunneridae > Pentapetalae > rosids > malvids > Brassicales > Brassicaceae > Camelineae > Arabidopsis
Accessions
- Primary accessionO04647
Proteomes
Organism-specific databases
Genome annotation databases
Subcellular Location
UniProt Annotation
GO Annotation
PTM/Processing
Features
Showing features for chain.
Type | ID | Position(s) | Description | ||
---|---|---|---|---|---|
Chain | PRO_0000363536 | 1-1038 | Pentatricopeptide repeat-containing protein At5g27270 | ||
Proteomic databases
Expression
Gene expression databases
Interaction
Protein-protein interaction databases
Structure
Family & Domains
Features
Showing features for compositional bias, region, repeat.
Type | ID | Position(s) | Description | ||
---|---|---|---|---|---|
Compositional bias | 23-43 | Polar residues | |||
Region | 23-69 | Disordered | |||
Compositional bias | 52-69 | Basic and acidic residues | |||
Repeat | 187-221 | PPR 1 | |||
Repeat | 222-256 | PPR 2 | |||
Repeat | 257-291 | PPR 3 | |||
Repeat | 292-326 | PPR 4 | |||
Repeat | 327-361 | PPR 5 | |||
Repeat | 362-396 | PPR 6 | |||
Repeat | 397-431 | PPR 7 | |||
Repeat | 432-466 | PPR 8 | |||
Repeat | 467-501 | PPR 9 | |||
Repeat | 502-535 | PPR 10 | |||
Repeat | 536-570 | PPR 11 | |||
Repeat | 601-631 | PPR 12 | |||
Repeat | 634-668 | PPR 13 | |||
Repeat | 669-699 | PPR 14 | |||
Repeat | 703-737 | PPR 15 | |||
Repeat | 738-772 | PPR 16 | |||
Repeat | 773-807 | PPR 17 | |||
Repeat | 808-842 | PPR 18 | |||
Repeat | 843-877 | PPR 19 | |||
Repeat | 878-912 | PPR 20 | |||
Repeat | 913-947 | PPR 21 | |||
Repeat | 948-982 | PPR 22 | |||
Repeat | 983-1017 | PPR 23 | |||
Sequence similarities
Belongs to the PPR family. P subfamily.
Keywords
- Domain
Phylogenomic databases
Family and domain databases
Sequence
- Sequence statusComplete
- Length1,038
- Mass (Da)117,451
- Last updated2009-02-10 v2
- ChecksumD67A41F703300B75
Computationally mapped potential isoform sequences
There are 3 potential isoforms mapped to this entry
Entry | Entry name | Gene name | Length | ||
---|---|---|---|---|---|
A0A1P8BDZ0 | A0A1P8BDZ0_ARATH | EMB976 | 817 | ||
A0A1P8BE00 | A0A1P8BE00_ARATH | EMB976 | 893 | ||
A0A1P8BE14 | A0A1P8BE14_ARATH | EMB976 | 833 |
Sequence caution
Features
Showing features for compositional bias.
Type | ID | Position(s) | Description | ||
---|---|---|---|---|---|
Compositional bias | 23-43 | Polar residues | |||
Compositional bias | 52-69 | Basic and acidic residues | |||
Keywords
- Technical term
Sequence databases
Nucleotide Sequence | Protein Sequence | Molecule Type | Status | |
---|---|---|---|---|
AC007123 EMBL· GenBank· DDBJ | - | Genomic DNA | No translation available. | |
AF007271 EMBL· GenBank· DDBJ | AAB61077.1 EMBL· GenBank· DDBJ | Genomic DNA | Sequence problems. | |
CP002688 EMBL· GenBank· DDBJ | AED93665.1 EMBL· GenBank· DDBJ | Genomic DNA |