O04647 · PP399_ARATH

Function

GO annotations

all annotationsall molecular functionnucleotide bindingmolecular_functionnucleic acid bindingdna bindingchromatin bindingdna-binding transcription factor activityrna bindingcytoskeletal motor activitycatalytic activitynuclease activitysignaling receptor bindingstructural molecule activitytransporter activitybindingprotein bindingtranslation factor activity, rna bindinglipid bindingkinase activitytransferase activityhydrolase activityoxygen bindingenzyme regulator activitycarbohydrate bindingsignaling receptor activitytranslation regulator activitytranscription regulator activityother molecular functionall biological processcarbohydrate metabolic processgeneration of precursor metabolites and energynucleobase-containing compound metabolic processdna metabolic processtranslationlipid metabolic processtransportresponse to stresscell cyclecell communicationsignal transductioncell-cell signalingmulticellular organism developmentcircadian rhythmbiological_processmetabolic processcatabolic processbiosynthetic processresponse to light stimulusresponse to external stimulustropismresponse to biotic stimulusresponse to abiotic stimulusresponse to endogenous stimulusembryo developmentpost-embryonic developmentfruit ripeningabscissionpollinationflower developmentcellular processprogrammed cell deathphotosynthesiscellular component organizationcell growthprotein metabolic processcellular homeostasissecondary metabolic processreproductive processcell differentiationprotein modification processgrowthepigenetic regulation of gene expressionresponse to chemicalanatomical structure developmentregulation of molecular functionother biological processall cellular componentcellular_componentextracellular regioncell wallintracellular anatomical structurenucleusnuclear envelopenucleoplasmnucleoluscytoplasmmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuscytosolribosomecytoskeletonplasma membranechloroplastplastidthylakoidmembraneexternal encapsulating structureother cellular component
Cell color indicative of number of GO terms
AspectTerm
Cellular Componentchloroplast stroma
Molecular FunctionmRNA binding
Biological Processchloroplast mRNA processing
Biological ProcessGroup II intron splicing

Names & Taxonomy

Protein names

  • Recommended name
    Pentatricopeptide repeat-containing protein At5g27270
  • Alternative names
    • Protein EMBRYO DEFECTIVE 976

Gene names

    • Name
      EMB976
    • ORF names
      A_TM021B04.10, F21A20.6, T21B4.180
    • Ordered locus names
      At5g27270

Organism names

  • Taxonomic identifier
  • Strain
    • cv. Columbia
  • Taxonomic lineage
    Eukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > eudicotyledons > Gunneridae > Pentapetalae > rosids > malvids > Brassicales > Brassicaceae > Camelineae > Arabidopsis

Accessions

  • Primary accession
    O04647

Proteomes

Organism-specific databases

Genome annotation databases

Subcellular Location

PTM/Processing

Features

Showing features for chain.

TypeIDPosition(s)Description
ChainPRO_00003635361-1038Pentatricopeptide repeat-containing protein At5g27270

Proteomic databases

Expression

Gene expression databases

Interaction

Protein-protein interaction databases

Structure

Family & Domains

Features

Showing features for compositional bias, region, repeat.

Type
IDPosition(s)Description
Compositional bias23-43Polar residues
Region23-69Disordered
Compositional bias52-69Basic and acidic residues
Repeat187-221PPR 1
Repeat222-256PPR 2
Repeat257-291PPR 3
Repeat292-326PPR 4
Repeat327-361PPR 5
Repeat362-396PPR 6
Repeat397-431PPR 7
Repeat432-466PPR 8
Repeat467-501PPR 9
Repeat502-535PPR 10
Repeat536-570PPR 11
Repeat601-631PPR 12
Repeat634-668PPR 13
Repeat669-699PPR 14
Repeat703-737PPR 15
Repeat738-772PPR 16
Repeat773-807PPR 17
Repeat808-842PPR 18
Repeat843-877PPR 19
Repeat878-912PPR 20
Repeat913-947PPR 21
Repeat948-982PPR 22
Repeat983-1017PPR 23

Sequence similarities

Belongs to the PPR family. P subfamily.

Keywords

Phylogenomic databases

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    1,038
  • Mass (Da)
    117,451
  • Last updated
    2009-02-10 v2
  • Checksum
    D67A41F703300B75
MKSDFLTSTTHFNPSIFLPKIPSRNSRISIKSSSSSSKVRPDPWSLSDGNPEKPKPRYERPKHPLSDDDARRIIKKKAQYLSTLRRNQGSQAMTPKWIKRTPEQMVQYLEDDRNGQMYGKHVVAAIKTVRGLSQRRQGSDDMRFVMSSFVAKLSFRDMCVVLKEQRGWRQVRDFFSWMKLQLSYRPSVVVYTIVLRLYGQVGKIKMAEETFLEMLEVGCEPDAVACGTMLCTYARWGRHSAMLTFYKAVQERRILLSTSVYNFMLSSLQKKSFHGKVIDLWLEMVEEGVPPNEFTYTLVVSSYAKQGFKEEALKAFGEMKSLGFVPEEVTYSSVISLSVKAGDWEKAIGLYEDMRSQGIVPSNYTCATMLSLYYKTENYPKALSLFADMERNKIPADEVIRGLIIRIYGKLGLFHDAQSMFEETERLNLLADEKTYLAMSQVHLNSGNVVKALDVIEMMKTRDIPLSRFAYIVMLQCYAKIQNVDCAEEAFRALSKTGLPDASSCNDMLNLYTRLNLGEKAKGFIKQIMVDQVHFDIELYKTAMRVYCKEGMVAEAQDLIVKMGREARVKDNRFVQTLAESMHIVNKHDKHEAVLNVSQLDVMALGLMLNLRLKEGNLNETKAILNLMFKTDLGSSAVNRVISSFVREGDVSKAEMIADIIIRLGLRMEEETIATLIAVYGRQHKLKEAKRLYLAAGESKTPGKSVIRSMIDAYVRCGWLEDAYGLFMESAEKGCDPGAVTISILVNALTNRGKHREAEHISRTCLEKNIELDTVGYNTLIKAMLEAGKLQCASEIYERMHTSGVPCSIQTYNTMISVYGRGLQLDKAIEIFSNARRSGLYLDEKIYTNMIMHYGKGGKMSEALSLFSEMQKKGIKPGTPSYNMMVKICATSRLHHEVDELLQAMERNGRCTDLSTYLTLIQVYAESSQFAEAEKTITLVKEKGIPLSHSHFSSLLSALVKAGMMEEAERTYCKMSEAGISPDSACKRTILKGYMTCGDAEKGILFYEKMIRSSVEDDRFVSSVVEDLYKAVGKEQDV

Computationally mapped potential isoform sequences

There are 3 potential isoforms mapped to this entry

View all
EntryEntry nameGene nameLength
A0A1P8BDZ0A0A1P8BDZ0_ARATHEMB976817
A0A1P8BE00A0A1P8BE00_ARATHEMB976893
A0A1P8BE14A0A1P8BE14_ARATHEMB976833

Sequence caution

The sequence AAB61077.1 differs from that shown. Reason: Erroneous gene model prediction

Features

Showing features for compositional bias.

TypeIDPosition(s)Description
Compositional bias23-43Polar residues
Compositional bias52-69Basic and acidic residues

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
AC007123
EMBL· GenBank· DDBJ
-Genomic DNA No translation available.
AF007271
EMBL· GenBank· DDBJ
AAB61077.1
EMBL· GenBank· DDBJ
Genomic DNA Sequence problems.
CP002688
EMBL· GenBank· DDBJ
AED93665.1
EMBL· GenBank· DDBJ
Genomic DNA

Genome annotation databases

Similar Proteins

Disclaimer

Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. Our staff consists of biologists and biochemists that are not trained to give medical advice.
We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.
Help