M0FRC5 · M0FRC5_9EURY

Function

function

Possesses two activities: a DNA synthesis (polymerase) and an exonucleolytic activity that degrades single-stranded DNA in the 3' to 5' direction. Has a template-primer preference which is characteristic of a replicative DNA polymerase.

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.

Catalytic activity

GO annotations

AspectTerm
Molecular FunctionDNA binding
Molecular FunctionDNA-directed DNA polymerase activity
Molecular Functionsingle-stranded DNA 3'-5' DNA exonuclease activity
Biological ProcessDNA catabolic process
Biological ProcessDNA-templated DNA replication

Keywords

Enzyme and pathway databases

Names & Taxonomy

Protein names

  • Recommended name
    DNA polymerase II small subunit
  • EC number
  • Short names
    Pol II
  • Alternative names
    • Exodeoxyribonuclease small subunit
      (EC:3.1.11.1
      ) . EC:3.1.11.1 (UniProtKB | ENZYME | Rhea)

Gene names

    • Name
      polB
    • ORF names
      C459_13834

Organism names

  • Taxonomic identifier
  • Strain
    • ATCC BAA-645
  • Taxonomic lineage
    Archaea > Euryarchaeota > Stenosarchaea group > Halobacteria > Halobacteriales > Haloferacaceae > Haloferax

Accessions

  • Primary accession
    M0FRC5

Proteomes

Interaction

Subunit

Heterodimer of a large subunit and a small subunit.

Family & Domains

Features

Showing features for region, compositional bias, domain.

TypeIDPosition(s)Description
Region65-130Disordered
Compositional bias97-122Polar residues
Domain281-478DNA polymerase alpha/delta/epsilon subunit B

Sequence similarities

Belongs to the DNA polymerase delta/II small subunit family.

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    533
  • Mass (Da)
    57,850
  • Last updated
    2013-04-03 v1
  • Checksum
    809B6DA9188B9B03
MPLETPARIVRTLVGRGYNAEREAVTLIAGSDDPGRTLARVVEAAPDDALRITADHVREVLASAPAADPSGTEPTPPAAADAANAADADPAASAASDPSVSAATSHDNAAHTDQSVPAEAQGTSGGRNVDPALRSLEIANDMTGQSTGTGEYDDFVKVFRDRYEKLSKLLRGRVNHRPAKAISNMSGGEDAELIGLVDDVRSTKSGHWIIDLEDTTGTFPCLVMKDKDIAGYVDELLMDECIAVQGTLSGDAGILFVDSMHFPDVPRSHRPNTADRDVQAALISDVHVGSQEFMADAWNRFADWLHTEEAARIEYLLIAGDMVEGVGVYPNQDEELDVIDIYEQYEAFSEHLKSVPGDLEIVMIPGNHDAVRLAEPQPGFDDELRDIMSAHDARITSNPSMVTLEGVNVLMYHGVSLDEVIAELPADKASYDEPHKAMYQLLKKRHVAPQFGGHTRLAPEELDYLVMEDVPDIFHTGHVHKLGWGKYHNVLAVNSGCWQAQTDFQKSVNIDPDAGYAPIVDLDTLNMTVRKFS

Features

Showing features for compositional bias.

TypeIDPosition(s)Description
Compositional bias97-122Polar residues

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
AOLE01000025
EMBL· GenBank· DDBJ
ELZ62596.1
EMBL· GenBank· DDBJ
Genomic DNA

Genome annotation databases

Similar Proteins

Disclaimer

Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. Our staff consists of biologists and biochemists that are not trained to give medical advice.
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