M0EBG7 · M0EBG7_9EURY

Function

function

DNA-dependent RNA polymerase (RNAP) catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Forms the clamp head domain.
DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.

Catalytic activity

Cofactor

Protein has several cofactor binding sites:
Mg2+ (UniProtKB | Rhea| CHEBI:18420 )

Zn2+ (UniProtKB | Rhea| CHEBI:29105 )

Note: Binds at least 2 Zn2+ per subunit.

Features

Showing features for binding site.

TypeIDPosition(s)Description
Binding site54Zn2+ 1 (UniProtKB | ChEBI)
Binding site57Zn2+ 1 (UniProtKB | ChEBI)
Binding site64Zn2+ 1 (UniProtKB | ChEBI)
Binding site67Zn2+ 1 (UniProtKB | ChEBI)
Binding site94Zn2+ 2 (UniProtKB | ChEBI)
Binding site97Zn2+ 2 (UniProtKB | ChEBI)
Binding site141Zn2+ 2 (UniProtKB | ChEBI)
Binding site144Zn2+ 2 (UniProtKB | ChEBI)
Binding site519Mg2+ (UniProtKB | ChEBI)
Binding site521Mg2+ (UniProtKB | ChEBI)
Binding site523Mg2+ (UniProtKB | ChEBI)

GO annotations

AspectTerm
Cellular Componentcytoplasm
Cellular ComponentDNA-directed RNA polymerase complex
Molecular FunctionDNA binding
Molecular Functionmagnesium ion binding
Molecular Functionplastid single subunit type RNA polymerase activity
Molecular FunctionRNA polymerase I activity
Molecular FunctionRNA polymerase II activity
Molecular FunctionRNA polymerase III activity
Molecular FunctionRNA polymerase IV activity
Molecular FunctionRNA polymerase V activity
Molecular Functionzinc ion binding

Keywords

Enzyme and pathway databases

Names & Taxonomy

Protein names

  • Recommended name
    DNA-directed RNA polymerase subunit Rpo1N
  • EC number
  • Alternative names
    • DNA-directed RNA polymerase subunit A'

Gene names

    • Name
      rpo1N
    • Synonyms
      rpoA1
    • ORF names
      C465_14496

Organism names

  • Taxonomic identifier
  • Strain
    • JCM 9100
  • Taxonomic lineage
    Archaea > Methanobacteriati > Methanobacteriota > Stenosarchaea group > Halobacteria > Halobacteriales > Haloferacaceae > Halorubrum > Halorubrum distributum group

Accessions

  • Primary accession
    M0EBG7

Proteomes

Subcellular Location

Keywords

Interaction

Subunit

Part of the RNA polymerase complex.

Family & Domains

Features

Showing features for domain, compositional bias, region.

Type
IDPosition(s)Description
Domain269-573RNA polymerase N-terminal
Compositional bias933-946Basic and acidic residues
Region933-970Disordered

Sequence similarities

Belongs to the RNA polymerase beta' chain family.

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    970
  • Mass (Da)
    108,015
  • Last updated
    2013-04-03 v1
  • MD5 Checksum
    61291E076C7D2B39759DBEB85EBE1497
MLGGIDFGLMDPETYRDMSATKVITADTYDDDGYPIDMGLMDPRLGVIDPGLECRTCGSHSGSCNGHFGHIELAAPVIHVGFTKLIRRLLRSTCRECGKLALDEAQRDEFRDRYERAKELGDDEHDVLKAAVRQARKASTCPFCGEPQADIKHEKPTTYYEVQDVLSGDYSERIAAAMQPDEEEDDPGTSPQELADETDIAVDRINEIMAGEFRPRKEDRRAIEKALDVDLTEEDMNKLMPSDIRDWFEDIPDEDLEVLGIDSEHSRPEWMILTVLPVPPVTTRPSITLDNGQRSEDDLTHKLVDIIRINQRFMENREAGAPQLIIEDLWELLQYHVTTFVDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNFSARTVISPDPTLSLNEVGVPDRVAKEMTQTLNVTERNVEEARQYVRNGPEAHPGANYVRRPDGRRLKVTEKNCEELAEKVEADWEVNRHLVDGDIVIFNRQPSLHRMSIMAHEVVVMPYKTFRLNTVVCPPYNADFDGDEMNMHALQNEEARAEARVLMRVQEQILSPRFGGNIIGAIQDHISGTYLLTHSNPEFSETQALDLLRATRVDELPEADGVDDDGREFWTGRTLFSELLPDDLDLSFTSSAGDSVVIEDGQLIEGTIDEDAVGAFGGEVVDTLTKEYGETRARVFINEIASLAMRAIMNFGFSIGIDDESIPPEAEEQVDEAIESAYDRVQELIETYEAGELESLPGRGVDETLEMKIMQTLGKARDSAGEIADQHFGDDNPAVVMARSGARGSMLNLTQMAGSVGQQAVRGERINRGYEDRTLSHYRPNDLSSEAHGFVENSYRGGLTPQEFFFHAMGGREGLVDTAVRTSKSGYLQRRLINALSELEAQYDGTVRDTSGRIVQFEFGEDGTSPVKVSSGEEDGIDVDGIVDRVVDAEFASDEEKERFLGEREPPTNLSEHAGPGLNKAGGPGVESDD

Features

Showing features for compositional bias.

TypeIDPosition(s)Description
Compositional bias933-946Basic and acidic residues

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
AOJM01000080
EMBL· GenBank· DDBJ
ELZ45141.1
EMBL· GenBank· DDBJ
Genomic DNA

Genome annotation databases

Similar Proteins

Disclaimer

Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. Our staff consists of biologists and biochemists that are not trained to give medical advice.
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