J3FE22 · J3FE22_9PSED
- ProteinNAD-capped RNA hydrolase NudC
- GenenudC
- StatusUniProtKB unreviewed (TrEMBL)
- Organism
- Amino acids276 (go to sequence)
- Protein existenceInferred from homology
- Annotation score4/5
Function
function
mRNA decapping enzyme that specifically removes the nicotinamide adenine dinucleotide (NAD) cap from a subset of mRNAs by hydrolyzing the diphosphate linkage to produce nicotinamide mononucleotide (NMN) and 5' monophosphate mRNA. The NAD-cap is present at the 5'-end of some mRNAs and stabilizes RNA against 5'-processing. Has preference for mRNAs with a 5'-end purine. Catalyzes the hydrolysis of a broad range of dinucleotide pyrophosphates.
Catalytic activity
- NAD+ + H2O = beta-nicotinamide D-ribonucleotide + AMP + 2 H+
- a 5'-end NAD+-phospho-ribonucleoside in mRNA + H2O = a 5'-end phospho-adenosine-phospho-ribonucleoside in mRNA + beta-nicotinamide D-ribonucleotide + 2 H+This reaction proceeds in the forward direction.
Cofactor
Protein has several cofactor binding sites:
Mn2+ (UniProtKB | Rhea| CHEBI:29035 )
Note: Divalent metal cations. Mg2+ or Mn2+.
Note: Binds 1 zinc ion per subunit.
Features
Showing features for binding site.
Type | ID | Position(s) | Description | ||
---|---|---|---|---|---|
Binding site | 82 | substrate | |||
Binding site | 112 | Zn2+ (UniProtKB | ChEBI) | |||
Binding site | 115 | Zn2+ (UniProtKB | ChEBI) | |||
Binding site | 125 | substrate | |||
Binding site | 130 | Zn2+ (UniProtKB | ChEBI) | |||
Binding site | 133 | Zn2+ (UniProtKB | ChEBI) | |||
Binding site | 138 | substrate | |||
Binding site | 172 | a divalent metal cation 1 (UniProtKB | ChEBI) | |||
Binding site | 188 | a divalent metal cation 3 (UniProtKB | ChEBI) | |||
Binding site | 188 | a divalent metal cation 2 (UniProtKB | ChEBI) | |||
Binding site | 192 | a divalent metal cation 3 (UniProtKB | ChEBI) | |||
Binding site | 192 | a divalent metal cation 1 (UniProtKB | ChEBI) | |||
Binding site | 206-213 | substrate | |||
Binding site | 233 | a divalent metal cation 3 (UniProtKB | ChEBI) | |||
Binding site | 233 | a divalent metal cation 1 (UniProtKB | ChEBI) | |||
Binding site | 255 | substrate | |||
GO annotations
Aspect | Term | |
---|---|---|
Cellular Component | cytosol | |
Molecular Function | magnesium ion binding | |
Molecular Function | manganese ion binding | |
Molecular Function | NAD+ diphosphatase activity | |
Molecular Function | NADH pyrophosphatase activity | |
Molecular Function | RNA NAD-cap (NMN-forming) hydrolase activity | |
Molecular Function | zinc ion binding | |
Biological Process | NAD catabolic process | |
Biological Process | NADH metabolic process | |
Biological Process | NADP catabolic process |
Keywords
- Molecular function
- Ligand
Enzyme and pathway databases
Names & Taxonomy
Protein names
- Recommended nameNAD-capped RNA hydrolase NudC
- EC number
- Short namesDeNADding enzyme NudC
- Alternative names
Gene names
Organism names
- Organism
- Strain
- Taxonomic lineageBacteria > Pseudomonadota > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas
Accessions
- Primary accessionJ3FE22
Proteomes
Subcellular Location
UniProt Annotation
GO Annotation
Interaction
Subunit
Homodimer.
Structure
Sequence
- Sequence statusComplete
- Length276
- Mass (Da)30,977
- Last updated2012-10-03 v1
- Checksum69F947CD785BE041
Sequence databases
Nucleotide Sequence | Protein Sequence | Molecule Type | Status | |
---|---|---|---|---|
AKJQ01000010 EMBL· GenBank· DDBJ | EJM31177.1 EMBL· GenBank· DDBJ | Genomic DNA |