I3IIW9 · I3IIW9_9BACT

Function

function

Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.

Catalytic activity

Cofactor

Fe2+ (UniProtKB | Rhea| CHEBI:29033 )

Note: Binds 1 Fe2+ ion.

Features

Showing features for binding site, active site.

TypeIDPosition(s)Description
Binding site88Fe cation (UniProtKB | ChEBI)
Binding site130Fe cation (UniProtKB | ChEBI)
Active site131
Binding site134Fe cation (UniProtKB | ChEBI)

GO annotations

AspectTerm
Molecular Functionmetal ion binding
Molecular Functionpeptide deformylase activity
Biological Processtranslation

Keywords

Enzyme and pathway databases

Names & Taxonomy

Protein names

  • Recommended name
    Peptide deformylase
  • EC number
  • Short names
    PDF
  • Alternative names
    • Polypeptide deformylase

Gene names

    • Name
      def
    • ORF names
      KSU1_C0068

Organism names

  • Taxonomic identifier
  • Taxonomic lineage
    Bacteria > Planctomycetota > Candidatus Brocadiia > Candidatus Brocadiales > Candidatus Brocadiaceae > Candidatus Jettenia

Accessions

  • Primary accession
    I3IIW9

Proteomes

Interaction

Protein-protein interaction databases

Family & Domains

Sequence similarities

Belongs to the polypeptide deformylase family.

Phylogenomic databases

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    170
  • Mass (Da)
    19,184
  • Last updated
    2012-07-11 v1
  • Checksum
    48E63D48EB20AB77
MNIIVYPDPVLRQKAKPLTEINKEVYQKVEEMMELMCQANGVGLAAPQVGWSVRLFIIDVNDSRCEDKVFINPTIIEETGELSKEEGCLSLPGIMSKVIRAQRIKARAYNLKGQKIEIEAEGLAARAWQHEIDHLNGCLFIDKISPANHLSISQQLKEFERSYSDIKASV

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
BAFH01000003
EMBL· GenBank· DDBJ
GAB61664.1
EMBL· GenBank· DDBJ
Genomic DNA

Similar Proteins

Disclaimer

Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. Our staff consists of biologists and biochemists that are not trained to give medical advice.
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