F8W3D4 · F8W3D4_DANRE

Function

function

RNA helicase.

Catalytic activity

GO annotations

all annotationsall molecular functionvirus receptor activitydna bindingrna bindingcytoskeletal motor activitycatalytic activitygtpase activitystructural molecule activitytransporter activitycytoskeletal protein bindinglipid bindingcyclase activityantioxidant activityoxidoreductase activitytransferase activityhydrolase activitylyase activityisomerase activityligase activityprotein tag activitycargo receptor activityhistone bindingprotein folding chaperonetranslation regulator activitynutrient reservoir activityreceptor ligand activitymolecular transducer activitymolecular adaptor activitytoxin activitycell adhesion mediator activitymolecular function regulator activityvirus coreceptor activitycatalytic activity, acting on a proteincatalytic activity, acting on dnacatalytic activity, acting on rnamolecular carrier activitytranscription regulator activitygeneral transcription initiation factor activitymolecular sensor activitymolecular sequestering activityatp-dependent activityother molecular functionall biological processmitotic cell cyclecytokinesiscytoplasmic translationimmune system processmuscle system processcirculatory system processrenal system processrespiratory system processcarbohydrate metabolic processgeneration of precursor metabolites and energydna replicationdna repairdna recombinationchromatin organizationdna-templated transcriptionregulation of dna-templated transcriptiontrna metabolic processprotein foldingprotein glycosylationamino acid metabolic processmodified amino acid metabolic processlipid metabolic processvitamin metabolic processsulfur compound metabolic processintracellular protein transportnucleocytoplasmic transportautophagyinflammatory responsemitochondrion organizationcytoskeleton organizationmicrotubule-based movementperoxisome organizationlysosome organizationchromosome segregationcell adhesionestablishment or maintenance of cell polarityprogrammed cell deathphotosynthesismrna metabolic processsnrna metabolic processvesicle-mediated transportreproductive processdigestive system processsignalingcell differentiationprotein catabolic processextracellular matrix organizationregulatory ncrna-mediated gene silencingtelomere organizationcell junction organizationwound healingribosome biogenesiscilium organizationanatomical structure developmentcell motilitynervous system processendocrine processprotein maturationtransmembrane transportnucleobase-containing small molecule metabolic processhepaticobiliary system processmembrane organizationprotein-containing complex assemblycell wall organization or biogenesisnitrogen cycle metabolic processprotein localization to plasma membranedefense response to other organismdetoxificationmeiotic nuclear divisionmitotic nuclear divisionmitochondrial gene expressioncarbohydrate derivative metabolic processother biological processall cellular componentnuclear chromosomeextracellular regionextracellular spacecell wallnucleusnuclear envelopenucleoplasmchromosomenucleolusmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuslipid dropletmicrotubule organizing centercytosolribosomecytoskeletonplasma membraneciliumplastidthylakoidexternal encapsulating structureextracellular matrixcytoplasmic vesicleorganelleother cellular component
Cell color indicative of number of GO terms
AspectTerm
Cellular Componentnucleus
Molecular FunctionATP binding
Molecular Functionhydrolase activity
Molecular FunctionRNA binding
Molecular FunctionRNA helicase activity
Biological ProcessrRNA processing

Keywords

Enzyme and pathway databases

Names & Taxonomy

Protein names

  • Recommended name
    ATP-dependent RNA helicase
  • EC number

Gene names

    • Name
      ddx10

Organism names

  • Taxonomic identifier
  • Strain
    • Tuebingen
  • Taxonomic lineage
    Eukaryota > Metazoa > Chordata > Craniata > Vertebrata > Euteleostomi > Actinopterygii > Neopterygii > Teleostei > Ostariophysi > Cypriniformes > Danionidae > Danioninae > Danio

Accessions

  • Primary accession
    F8W3D4
  • Secondary accessions
    • A0A8M1QV67

Proteomes

Organism-specific databases

Subcellular Location

Expression

Gene expression databases

Interaction

Protein-protein interaction databases

Family & Domains

Features

Showing features for domain, motif, compositional bias, region.

TypeIDPosition(s)Description
Domain70-98DEAD-box RNA helicase Q
Motif70-98Q motif
Domain101-275Helicase ATP-binding
Domain301-453Helicase C-terminal
Compositional bias525-555Polar residues
Region525-604Disordered
Compositional bias560-581Acidic residues
Region626-649Disordered
Compositional bias703-718Basic and acidic residues
Region703-847Disordered
Compositional bias730-749Basic and acidic residues
Compositional bias750-769Acidic residues
Compositional bias778-811Basic and acidic residues

Domain

The Q motif is unique to and characteristic of the DEAD box family of RNA helicases and controls ATP binding and hydrolysis.

Sequence similarities

Belongs to the DEAD box helicase family. DDX10/DBP4 subfamily.

Phylogenomic databases

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    864
  • Mass (Da)
    99,196
  • Last updated
    2011-09-21 v1
  • Checksum
    344D7C2818512769
MRDKKVKEKTNITDDPVKNFEKWKKKYAKTKTKVKRSQKSKVKKRDWEVERENIKKLVDKYSEINPKEAVKFSDFPLSKKTLKGLLEAQYRQPTEIQRQTIGFALQGRDVLGAAKTGSGKTLAFLIPVLECLYREQWTAMDGLGALIISPTRELAYQTFEVLRKVGKNHEFSAGLVIGGKDLKDESEKIHRTNIIICTPGRLLQHMDETATFHASDLHMLVLDEADRILDMGFADTLNAIVENLPKSRQTLLFSATQTRSVKDLARLSLKDPEYVWVHEQAKFSTPATLEQNYVVCELHQKVNMLYSFLRSHLQKKIIVFFACCKEVQYLFRIFCRLRPGISVLALHGKQQQMKRVEVYNDFVRKTSAVLFATDIAARGLDFPAVNWVLQFDCPEDANTYIHRVGRTARYKEGGEALLVLLPSEEKGMISQLQEKKVPINKIQVNPEKLMSVQQKLEAFLAQEKEQKERAQRCFVSYLRSVYLMKNKDVFDVLQLKLPEYAMSLGLAVAPRVRFLLKAQQQRRTAAQDDSSTAGHQSEDELQSFTAQLQQQKTKSEPSQSEEEEDDDDDDDEGDDDDEDIKDQDSLKPLSLLCGFNEEDDDDDQREADLLTVKCKDVFNVKEEIKDEEDADADAKNRKQKESKFKDAKKIQKRNLKVNTKKVFTEDGKVVQQWPPLQRTVVPDEEDDDDVMTGINVEAAKERLRREDQAFDKMEYRRKIKEKHREKRLKEKAARREASKQHKEEKRKADGDDDDNDDDEDEEEVVAYLSGADEEFDPSTLPDPDKVHNSESSEEDGESSDAGGKKRSFSSEDEDDDDDDDDDEEQTTQKSRKKPRTEPTVTALDTGLSLAEDEELVLHLLSSHS

Features

Showing features for compositional bias.

TypeIDPosition(s)Description
Compositional bias525-555Polar residues
Compositional bias560-581Acidic residues
Compositional bias703-718Basic and acidic residues
Compositional bias730-749Basic and acidic residues
Compositional bias750-769Acidic residues
Compositional bias778-811Basic and acidic residues

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
CR450711
EMBL· GenBank· DDBJ
-Genomic DNA No translation available.

Genome annotation databases

Similar Proteins

Disclaimer

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