F4K9L3 · F4K9L3_ARATH
- ProteinBasic helix-loop-helix (BHLH) DNA-binding superfamily protein
- GeneBIM1
- StatusUniProtKB unreviewed (TrEMBL)
- Amino acids532 (go to sequence)
- Protein existenceEvidence at protein level
- Annotation score3/5
Function
GO annotations
all annotations | all molecular function | nucleotide binding | molecular_function | nucleic acid binding | dna binding | chromatin binding | dna-binding transcription factor activity | rna binding | cytoskeletal motor activity | catalytic activity | nuclease activity | signaling receptor binding | structural molecule activity | transporter activity | binding | protein binding | translation factor activity, rna binding | lipid binding | kinase activity | transferase activity | hydrolase activity | oxygen binding | enzyme regulator activity | carbohydrate binding | signaling receptor activity | translation regulator activity | transcription regulator activity | other molecular function | all biological process | carbohydrate metabolic process | generation of precursor metabolites and energy | nucleobase-containing compound metabolic process | dna metabolic process | translation | lipid metabolic process | transport | response to stress | cell cycle | cell communication | signal transduction | cell-cell signaling | multicellular organism development | circadian rhythm | biological_process | metabolic process | catabolic process | biosynthetic process | response to light stimulus | response to external stimulus | tropism | response to biotic stimulus | response to abiotic stimulus | response to endogenous stimulus | embryo development | post-embryonic development | fruit ripening | abscission | pollination | flower development | cellular process | programmed cell death | photosynthesis | cellular component organization | cell growth | protein metabolic process | cellular homeostasis | secondary metabolic process | reproductive process | cell differentiation | protein modification process | growth | epigenetic regulation of gene expression | response to chemical | anatomical structure development | regulation of molecular function | other biological process | all cellular component | cellular_component | extracellular region | cell wall | intracellular anatomical structure | nucleus | nuclear envelope | nucleoplasm | nucleolus | cytoplasm | mitochondrion | lysosome | endosome | vacuole | peroxisome | endoplasmic reticulum | golgi apparatus | cytosol | ribosome | cytoskeleton | plasma membrane | chloroplast | plastid | thylakoid | membrane | external encapsulating structure | other cellular component | |||
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Aspect | Term | |
---|---|---|
Cellular Component | nucleus | |
Molecular Function | DNA binding | |
Molecular Function | DNA-binding transcription factor activity | |
Molecular Function | protein dimerization activity | |
Molecular Function | transcription cis-regulatory region binding | |
Biological Process | brassinosteroid mediated signaling pathway | |
Biological Process | DNA-templated transcription | |
Biological Process | positive regulation of shade avoidance | |
Biological Process | regulation of DNA-templated transcription |
Keywords
- Molecular function
- Biological process
Names & Taxonomy
Protein names
- Submitted names
Gene names
Organism names
- Strain
- Taxonomic lineageEukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > eudicotyledons > Gunneridae > Pentapetalae > rosids > malvids > Brassicales > Brassicaceae > Camelineae > Arabidopsis
Accessions
- Primary accessionF4K9L3
Proteomes
Organism-specific databases
Genome annotation databases
Subcellular Location
Expression
Gene expression databases
Interaction
Protein-protein interaction databases
Structure
Family & Domains
Features
Showing features for region, compositional bias, domain.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Region | 1-96 | Disordered | ||||
Sequence: MELPQPRPFKTQEFRTGRKPTHDFLSLCSHSTVHPDPKPTPPPSSQGSHLKTHDFLQPLECVGAKEDVSRINSTTTASEKPPPPAPPPPLQHVLPG | ||||||
Compositional bias | 79-93 | Pro residues | ||||
Sequence: EKPPPPAPPPPLQHV | ||||||
Compositional bias | 249-271 | Basic and acidic residues | ||||
Sequence: KKESSSTSQSHRVDLRVKADVRG | ||||||
Region | 249-297 | Disordered | ||||
Sequence: KKESSSTSQSHRVDLRVKADVRGSPNDQKLNTPRSKHSATEQRRRSKIN | ||||||
Domain | 280-330 | BHLH | ||||
Sequence: TPRSKHSATEQRRRSKINDRFQMLRQLIPNSDQKRDKASFLLEVIEYIQFL | ||||||
Compositional bias | 282-297 | Basic and acidic residues | ||||
Sequence: RSKHSATEQRRRSKIN | ||||||
Region | 428-453 | Disordered | ||||
Sequence: RVASSEAVEPSPSSRSQKEEEDEEVL | ||||||
Region | 494-532 | Disordered | ||||
Sequence: AKQSSSSSFKDHEVREPVSRTRNDNVKQTRKPKRLKTGQ | ||||||
Compositional bias | 499-524 | Basic and acidic residues | ||||
Sequence: SSSFKDHEVREPVSRTRNDNVKQTRK |
Family and domain databases
Sequence
- Sequence statusComplete
- Length532
- Mass (Da)59,116
- Last updated2011-06-28 v1
- Checksum67BC4A3B211611F0
Computationally mapped potential isoform sequences
There are 5 potential isoforms mapped to this entry
Entry | Entry name | Gene name | Length | ||
---|---|---|---|---|---|
Q9LEZ3 | BIM1_ARATH | BIM1 | 529 | ||
F4K9L2 | F4K9L2_ARATH | BIM1 | 529 | ||
F4K9L4 | F4K9L4_ARATH | BIM1 | 408 | ||
A0A1P8BBP3 | A0A1P8BBP3_ARATH | BIM1 | 533 | ||
A0A1P8BBN4 | A0A1P8BBN4_ARATH | BIM1 | 528 |
Features
Showing features for compositional bias.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Compositional bias | 79-93 | Pro residues | ||||
Sequence: EKPPPPAPPPPLQHV | ||||||
Compositional bias | 249-271 | Basic and acidic residues | ||||
Sequence: KKESSSTSQSHRVDLRVKADVRG | ||||||
Compositional bias | 282-297 | Basic and acidic residues | ||||
Sequence: RSKHSATEQRRRSKIN | ||||||
Compositional bias | 499-524 | Basic and acidic residues | ||||
Sequence: SSSFKDHEVREPVSRTRNDNVKQTRK |
Keywords
- Technical term
Sequence databases
Nucleotide Sequence | Protein Sequence | Molecule Type | Status | |
---|---|---|---|---|
CP002688 EMBL· GenBank· DDBJ | AED91255.1 EMBL· GenBank· DDBJ | Genomic DNA |