F4JF21 · PTA10_ARATH
- ProteinProtein PLASTID TRANSCRIPTIONALLY ACTIVE 10
- GenePTAC10
- StatusUniProtKB reviewed (Swiss-Prot)
- Amino acids668 (go to sequence)
- Protein existenceEvidence at protein level
- Annotation score4/5
Function
GO annotations
all annotations | all molecular function | nucleotide binding | molecular_function | nucleic acid binding | dna binding | chromatin binding | dna-binding transcription factor activity | rna binding | cytoskeletal motor activity | catalytic activity | nuclease activity | signaling receptor binding | structural molecule activity | transporter activity | binding | protein binding | translation factor activity, rna binding | lipid binding | kinase activity | transferase activity | hydrolase activity | oxygen binding | enzyme regulator activity | carbohydrate binding | signaling receptor activity | translation regulator activity | transcription regulator activity | other molecular function | all biological process | carbohydrate metabolic process | generation of precursor metabolites and energy | nucleobase-containing compound metabolic process | dna metabolic process | translation | lipid metabolic process | transport | response to stress | cell cycle | cell communication | signal transduction | cell-cell signaling | multicellular organism development | circadian rhythm | biological_process | metabolic process | catabolic process | biosynthetic process | response to light stimulus | response to external stimulus | tropism | response to biotic stimulus | response to abiotic stimulus | response to endogenous stimulus | embryo development | post-embryonic development | fruit ripening | abscission | pollination | flower development | cellular process | programmed cell death | photosynthesis | cellular component organization | cell growth | protein metabolic process | cellular homeostasis | secondary metabolic process | reproductive process | cell differentiation | protein modification process | growth | epigenetic regulation of gene expression | response to chemical | anatomical structure development | regulation of molecular function | other biological process | all cellular component | cellular_component | extracellular region | cell wall | intracellular anatomical structure | nucleus | nuclear envelope | nucleoplasm | nucleolus | cytoplasm | mitochondrion | lysosome | endosome | vacuole | peroxisome | endoplasmic reticulum | golgi apparatus | cytosol | ribosome | cytoskeleton | plasma membrane | chloroplast | plastid | thylakoid | membrane | external encapsulating structure | other cellular component | |||
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Aspect | Term | |
---|---|---|
Cellular Component | chloroplast | |
Cellular Component | chloroplast nucleoid | |
Cellular Component | chloroplast stroma | |
Cellular Component | plastid-encoded plastid RNA polymerase complex | |
Molecular Function | RNA binding |
Names & Taxonomy
Protein names
- Recommended nameProtein PLASTID TRANSCRIPTIONALLY ACTIVE 10
- Short namespTAC10
- Alternative names
Gene names
Organism names
- Strain
- Taxonomic lineageEukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > eudicotyledons > Gunneridae > Pentapetalae > rosids > malvids > Brassicales > Brassicaceae > Camelineae > Arabidopsis
Accessions
- Primary accessionF4JF21
- Secondary accessions
Proteomes
Organism-specific databases
Genome annotation databases
Subcellular Location
PTM/Processing
Features
Showing features for transit peptide, chain, modified residue.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Transit peptide | 1-40 | Chloroplast | ||||
Sequence: MQICQTKLNFTFPNPTNPNFCKPKALQWSPPRRISLLPCR | ||||||
Chain | PRO_0000433434 | 41-668 | Protein PLASTID TRANSCRIPTIONALLY ACTIVE 10 | |||
Sequence: GFSSDEFPVDETFLEKFGPKDKDTEDEARRRNWIERGWAPWEEILTPEADFARKSLNEGEEVPLQSPEAIEAFKMLRPSYRKKKIKEMGITEDEWYAKQFEIRGDKPPPLETSWAGPMVLRQIPPRDWPPRGWEVDRKELEFIREAHKLMAERVWLEDLDKDLRVGEDATVDKMCLERFKVFLKQYKEWVEDNKDRLEEESYKLDQDFYPGRRKRGKDYEDGMYELPFYYPGMVCEGTVTTLHLYQGAFVDIGGVHEGWVPIKGNDWFWIRHFIKVGMHVIVEITAKRDPYRFRFPLELRFVHPNIDHMIFNKFDFPPIFHRDGDTNPDEIRRDCGRPPEPRKDPGSKPEEEGLLSDHPYVDKLWQIHVAEQMILGDYEANPAKYEGKKLSELSDDEDFDEQKDIEYGEAYYKKTKLPKVILKTSVKELDLEAALTERQHHNKLMMEAKARGEGYKIDKLRRNIEMDEYDFLHWRRSLEEREALLRDISSRQALGLPLEEPGRYKPGSFFGKDQYDPTSALYQYDYWGEPKNSEISKQERMKDAHNKSIVGKGNVWYDMSYDDAIKQTIEKRKEGSTLASQEEETESEEEEEDDDDFDDFDYSILSDESSIGYSEQQPLVNGTQVLTD | ||||||
Modified residue | 434 | Phosphoserine | ||||
Sequence: S |
Keywords
- PTM
Proteomic databases
PTM databases
Expression
Gene expression databases
Structure
Family & Domains
Features
Showing features for domain, region, compositional bias.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Domain | 272-340 | S1 motif | ||||
Sequence: GMVCEGTVTTLHLYQGAFVDIGGVHEGWVPIKGNDWFWIRHFIKVGMHVIVEITAKRDPYRFRFPLELR | ||||||
Region | 362-394 | Disordered | ||||
Sequence: RDGDTNPDEIRRDCGRPPEPRKDPGSKPEEEGL | ||||||
Region | 611-668 | Disordered | ||||
Sequence: KRKEGSTLASQEEETESEEEEEDDDDFDDFDYSILSDESSIGYSEQQPLVNGTQVLTD | ||||||
Compositional bias | 621-643 | Acidic residues | ||||
Sequence: QEEETESEEEEEDDDDFDDFDYS | ||||||
Compositional bias | 647-668 | Polar residues | ||||
Sequence: DESSIGYSEQQPLVNGTQVLTD |
Keywords
- Domain
Phylogenomic databases
Family and domain databases
Sequence & Isoform
- Sequence statusComplete
- Sequence processingThe displayed sequence is further processed into a mature form.
This entry describes 2 isoforms produced by Alternative splicing.
F4JF21-1
This isoform has been chosen as the canonical sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.
- Name1
- Length668
- Mass (Da)78,814
- Last updated2011-06-28 v1
- ChecksumA3B3A2454512C262
F4JF21-2
- Name2
- Differences from canonical
- 325-325: T → TVILRHIFFFRIYKNLNGNCFILLFLLFFQ
Sequence caution
Features
Showing features for alternative sequence, compositional bias.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Alternative sequence | VSP_057776 | 325 | in isoform 2 | |||
Sequence: T → TVILRHIFFFRIYKNLNGNCFILLFLLFFQ | ||||||
Compositional bias | 621-643 | Acidic residues | ||||
Sequence: QEEETESEEEEEDDDDFDDFDYS | ||||||
Compositional bias | 647-668 | Polar residues | ||||
Sequence: DESSIGYSEQQPLVNGTQVLTD |
Keywords
- Coding sequence diversity
- Technical term
Sequence databases
Nucleotide Sequence | Protein Sequence | Molecule Type | Status | |
---|---|---|---|---|
AL049659 EMBL· GenBank· DDBJ | CAB88331.1 EMBL· GenBank· DDBJ | Genomic DNA | Sequence problems. | |
AL133315 EMBL· GenBank· DDBJ | CAB62339.1 EMBL· GenBank· DDBJ | Genomic DNA | Sequence problems. | |
CP002686 EMBL· GenBank· DDBJ | AEE78423.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
CP002686 EMBL· GenBank· DDBJ | AEE78424.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AK229521 EMBL· GenBank· DDBJ | BAF01376.1 EMBL· GenBank· DDBJ | mRNA | ||
AY128335 EMBL· GenBank· DDBJ | AAM91538.1 EMBL· GenBank· DDBJ | mRNA | Different initiation |