F4IMQ0 · FLX_ARATH
- ProteinProtein FLC EXPRESSOR
- GeneFLX
- StatusUniProtKB reviewed (Swiss-Prot)
- Amino acids288 (go to sequence)
- Protein existenceEvidence at protein level
- Annotation score4/5
Variants
Variant ID(s) | Position(s) | Change | Description | Clinical significance | Provenance | ||
---|---|---|---|---|---|---|---|
tmp_2_12861856_C_T | 3 | G>R | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 2:g.12861856C>T Codon: GGA/AGA Consequence type: missense Cytogenetic band: Genomic location: 2:g.12861856C>T Locations: - p.Gly3Arg (EnsemblPlants:AT2G30120.2) - c.7G>A (EnsemblPlants:AT2G30120.2) Source type: large scale study Cross-references: | |||||||
tmp_2_12861822_G_A | 14 | S>L | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.33) Somatic: No Accession: 2:g.12861822G>A Codon: TCA/TTA Consequence type: missense Cytogenetic band: Genomic location: 2:g.12861822G>A Locations: - p.Ser14Leu (EnsemblPlants:AT2G30120.2) - c.41C>T (EnsemblPlants:AT2G30120.2) Source type: large scale study Cross-references: | |||||||
tmp_2_12861788_T_A | 25 | Q>H | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.25) Somatic: No Accession: 2:g.12861788T>A Codon: CAA/CAT Consequence type: missense Cytogenetic band: Genomic location: 2:g.12861788T>A Locations: - p.Gln25His (EnsemblPlants:AT2G30120.2) - c.75A>T (EnsemblPlants:AT2G30120.2) Source type: large scale study Cross-references: | |||||||
ENSVATH05629116 | 55 | N>T | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.61) Somatic: No Accession: 2:g.12861699T>G Codon: AAC/ACC Consequence type: missense Cytogenetic band: Genomic location: 2:g.12861699T>G Locations: - p.Asn55Thr (EnsemblPlants:AT2G30120.2) - c.164A>C (EnsemblPlants:AT2G30120.2) Source type: large scale study Cross-references: | |||||||
tmp_2_12861687_C_A | 59 | R>L | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 2:g.12861687C>A Codon: CGA/CTA Consequence type: missense Cytogenetic band: Genomic location: 2:g.12861687C>A Locations: - p.Arg59Leu (EnsemblPlants:AT2G30120.2) - c.176G>T (EnsemblPlants:AT2G30120.2) Source type: large scale study Cross-references: | |||||||
tmp_2_12861668_G_C | 65 | I>M | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 2:g.12861668G>C Codon: ATC/ATG Consequence type: missense Cytogenetic band: Genomic location: 2:g.12861668G>C Locations: - p.Ile65Met (EnsemblPlants:AT2G30120.2) - c.195C>G (EnsemblPlants:AT2G30120.2) Source type: large scale study Cross-references: | |||||||
tmp_2_12861667_C_T | 66 | G>R | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0) Somatic: No Accession: 2:g.12861667C>T Codon: GGA/AGA Consequence type: missense Cytogenetic band: Genomic location: 2:g.12861667C>T Locations: - p.Gly66Arg (EnsemblPlants:AT2G30120.2) - c.196G>A (EnsemblPlants:AT2G30120.2) Source type: large scale study Cross-references: | |||||||
ENSVATH00254504 | 86 | V>A | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (1) Somatic: No Accession: 2:g.12861606A>G Codon: GTT/GCT Consequence type: missense Cytogenetic band: Genomic location: 2:g.12861606A>G Locations: - p.Val86Ala (EnsemblPlants:AT2G30120.2) - c.257T>C (EnsemblPlants:AT2G30120.2) Source type: large scale study Cross-references: | |||||||
ENSVATH00254503 | 87 | K>Q | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.27) Somatic: No Accession: 2:g.12861604T>G Codon: AAA/CAA Consequence type: missense Cytogenetic band: Genomic location: 2:g.12861604T>G Locations: - p.Lys87Gln (EnsemblPlants:AT2G30120.2) - c.259A>C (EnsemblPlants:AT2G30120.2) Source type: large scale study Cross-references: | |||||||
ENSVATH05629115 | 90 | A>T | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.04) Somatic: No Accession: 2:g.12861595C>T Codon: GCG/ACG Consequence type: missense Cytogenetic band: Genomic location: 2:g.12861595C>T Locations: - p.Ala90Thr (EnsemblPlants:AT2G30120.2) - c.268G>A (EnsemblPlants:AT2G30120.2) Source type: large scale study Cross-references: | |||||||
tmp_2_12861556_C_A | 103 | A>S | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (1) Somatic: No Accession: 2:g.12861556C>A Codon: GCG/TCG Consequence type: missense Cytogenetic band: Genomic location: 2:g.12861556C>A Locations: - p.Ala103Ser (EnsemblPlants:AT2G30120.2) - c.307G>T (EnsemblPlants:AT2G30120.2) Source type: large scale study Cross-references: | |||||||
ENSVATH05629114 | 151 | A>G | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.14) Somatic: No Accession: 2:g.12861411G>C Codon: GCT/GGT Consequence type: missense Cytogenetic band: Genomic location: 2:g.12861411G>C Locations: - p.Ala151Gly (EnsemblPlants:AT2G30120.2) - c.452C>G (EnsemblPlants:AT2G30120.2) Source type: large scale study Cross-references: | |||||||
ENSVATH01927580 | 163 | L>S | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.03) Somatic: No Accession: 2:g.12861375A>G Codon: TTG/TCG Consequence type: missense Cytogenetic band: Genomic location: 2:g.12861375A>G Locations: - p.Leu163Ser (EnsemblPlants:AT2G30120.2) - c.488T>C (EnsemblPlants:AT2G30120.2) Source type: large scale study Cross-references: | |||||||
ENSVATH01927581 | 163 | L>V | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.05) Somatic: No Accession: 2:g.12861376A>C Codon: TTG/GTG Consequence type: missense Cytogenetic band: Genomic location: 2:g.12861376A>C Locations: - p.Leu163Val (EnsemblPlants:AT2G30120.2) - c.487T>G (EnsemblPlants:AT2G30120.2) Source type: large scale study Cross-references: | |||||||
tmp_2_12861341_T_A | 174 | K>N | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.03) Somatic: No Accession: 2:g.12861341T>A Codon: AAA/AAT Consequence type: missense Cytogenetic band: Genomic location: 2:g.12861341T>A Locations: - p.Lys174Asn (EnsemblPlants:AT2G30120.2) - c.522A>T (EnsemblPlants:AT2G30120.2) Source type: large scale study Cross-references: | |||||||
tmp_2_12861149_C_A | 193 | E>D | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.53) Somatic: No Accession: 2:g.12861149C>A Codon: GAG/GAT Consequence type: missense Cytogenetic band: Genomic location: 2:g.12861149C>A Locations: - p.Glu193Asp (EnsemblPlants:AT2G30120.2) - c.579G>T (EnsemblPlants:AT2G30120.2) Source type: large scale study Cross-references: | |||||||
tmp_2_12861147_C_T | 194 | R>H | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.02) Somatic: No Accession: 2:g.12861147C>T Codon: CGC/CAC Consequence type: missense Cytogenetic band: Genomic location: 2:g.12861147C>T Locations: - p.Arg194His (EnsemblPlants:AT2G30120.2) - c.581G>A (EnsemblPlants:AT2G30120.2) Source type: large scale study Cross-references: | |||||||
tmp_2_12861140_C_G | 196 | M>I | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.01) Somatic: No Accession: 2:g.12861140C>G Codon: ATG/ATC Consequence type: missense Cytogenetic band: Genomic location: 2:g.12861140C>G Locations: - p.Met196Ile (EnsemblPlants:AT2G30120.2) - c.588G>C (EnsemblPlants:AT2G30120.2) Source type: large scale study Cross-references: | |||||||
ENSVATH00254502 | 221 | A>S | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.08) Somatic: No Accession: 2:g.12861067C>A Codon: GCT/TCT Consequence type: missense Cytogenetic band: Genomic location: 2:g.12861067C>A Locations: - p.Ala221Ser (EnsemblPlants:AT2G30120.2) - c.661G>T (EnsemblPlants:AT2G30120.2) Source type: large scale study Cross-references: | |||||||
tmp_2_12861051_G_A | 226 | A>V | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: deleterious (0.05) Somatic: No Accession: 2:g.12861051G>A Codon: GCA/GTA Consequence type: missense Cytogenetic band: Genomic location: 2:g.12861051G>A Locations: - p.Ala226Val (EnsemblPlants:AT2G30120.2) - c.677C>T (EnsemblPlants:AT2G30120.2) Source type: large scale study Cross-references: | |||||||
tmp_2_12861049_C_T | 227 | A>T | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.11) Somatic: No Accession: 2:g.12861049C>T Codon: GCT/ACT Consequence type: missense Cytogenetic band: Genomic location: 2:g.12861049C>T Locations: - p.Ala227Thr (EnsemblPlants:AT2G30120.2) - c.679G>A (EnsemblPlants:AT2G30120.2) Source type: large scale study Cross-references: | |||||||
ENSVATH01927578 | 233 | T>N | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (1) Somatic: No Accession: 2:g.12861030G>T Codon: ACC/AAC Consequence type: missense Cytogenetic band: Genomic location: 2:g.12861030G>T Locations: - p.Thr233Asn (EnsemblPlants:AT2G30120.2) - c.698C>A (EnsemblPlants:AT2G30120.2) Source type: large scale study Cross-references: | |||||||
ENSVATH05629109 | 239 | A>T | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.84) Somatic: No Accession: 2:g.12860927C>T Codon: GCT/ACT Consequence type: missense Cytogenetic band: Genomic location: 2:g.12860927C>T Locations: - p.Ala239Thr (EnsemblPlants:AT2G30120.2) - c.715G>A (EnsemblPlants:AT2G30120.2) Source type: large scale study Cross-references: | |||||||
ENSVATH14571855 | 248 | D>N | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.51) Somatic: No Accession: 2:g.12860900C>T Codon: GAT/AAT Consequence type: missense Cytogenetic band: Genomic location: 2:g.12860900C>T Locations: - p.Asp248Asn (EnsemblPlants:AT2G30120.2) - c.742G>A (EnsemblPlants:AT2G30120.2) Source type: large scale study Cross-references: | |||||||
tmp_2_12860865_C_A | 259 | E>D | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated (0.76) Somatic: No Accession: 2:g.12860865C>A Codon: GAG/GAT Consequence type: missense Cytogenetic band: Genomic location: 2:g.12860865C>A Locations: - p.Glu259Asp (EnsemblPlants:AT2G30120.2) - c.777G>T (EnsemblPlants:AT2G30120.2) Source type: large scale study Cross-references: | |||||||
ENSVATH01927575 | 268 | L>V | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated - low confidence (1) Somatic: No Accession: 2:g.12860672G>C Codon: CTC/GTC Consequence type: missense Cytogenetic band: Genomic location: 2:g.12860672G>C Locations: - p.Leu268Val (EnsemblPlants:AT2G30120.2) - c.802C>G (EnsemblPlants:AT2G30120.2) Source type: large scale study Cross-references: | |||||||
ENSVATH05629104 | 273 | Y>N | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated - low confidence (0.07) Somatic: No Accession: 2:g.12860657A>T Codon: TAT/AAT Consequence type: missense Cytogenetic band: Genomic location: 2:g.12860657A>T Locations: - p.Tyr273Asn (EnsemblPlants:AT2G30120.2) - c.817T>A (EnsemblPlants:AT2G30120.2) Source type: large scale study Cross-references: | |||||||
tmp_2_12860630_G_C | 282 | L>V | 1000Genomes | ||||
Consequence: missense Predictions: - SIFT: tolerated - low confidence (0.71) Somatic: No Accession: 2:g.12860630G>C Codon: CTT/GTT Consequence type: missense Cytogenetic band: Genomic location: 2:g.12860630G>C Locations: - p.Leu282Val (EnsemblPlants:AT2G30120.2) - c.844C>G (EnsemblPlants:AT2G30120.2) Source type: large scale study Cross-references: |