F1REK0 · F1REK0_DANRE

Function

GO annotations

all annotationsall molecular functionvirus receptor activitydna bindingrna bindingcytoskeletal motor activitycatalytic activitygtpase activitystructural molecule activitytransporter activitycytoskeletal protein bindinglipid bindingcyclase activityantioxidant activityoxidoreductase activitytransferase activityhydrolase activitylyase activityisomerase activityligase activityprotein tag activitycargo receptor activityhistone bindingprotein folding chaperonetranslation regulator activitynutrient reservoir activityreceptor ligand activitymolecular transducer activitymolecular adaptor activitytoxin activitycell adhesion mediator activitymolecular function regulator activityvirus coreceptor activitycatalytic activity, acting on a proteincatalytic activity, acting on dnacatalytic activity, acting on rnamolecular carrier activitytranscription regulator activitygeneral transcription initiation factor activitymolecular sensor activitymolecular sequestering activityatp-dependent activityother molecular functionall biological processmitotic cell cyclecytokinesiscytoplasmic translationimmune system processmuscle system processcirculatory system processrenal system processrespiratory system processcarbohydrate metabolic processgeneration of precursor metabolites and energydna replicationdna repairdna recombinationchromatin organizationdna-templated transcriptionregulation of dna-templated transcriptiontrna metabolic processprotein foldingprotein glycosylationamino acid metabolic processmodified amino acid metabolic processlipid metabolic processvitamin metabolic processsulfur compound metabolic processintracellular protein transportnucleocytoplasmic transportautophagyinflammatory responsemitochondrion organizationcytoskeleton organizationmicrotubule-based movementperoxisome organizationlysosome organizationchromosome segregationcell adhesionestablishment or maintenance of cell polarityprogrammed cell deathphotosynthesismrna metabolic processsnrna metabolic processvesicle-mediated transportreproductive processdigestive system processsignalingcell differentiationprotein catabolic processextracellular matrix organizationregulatory ncrna-mediated gene silencingtelomere organizationcell junction organizationwound healingribosome biogenesiscilium organizationanatomical structure developmentcell motilitynervous system processendocrine processprotein maturationtransmembrane transportnucleobase-containing small molecule metabolic processhepaticobiliary system processmembrane organizationprotein-containing complex assemblycell wall organization or biogenesisnitrogen cycle metabolic processprotein localization to plasma membranedefense response to other organismdetoxificationmeiotic nuclear divisionmitotic nuclear divisionmitochondrial gene expressioncarbohydrate derivative metabolic processother biological processall cellular componentnuclear chromosomeextracellular regionextracellular spacecell wallnucleusnuclear envelopenucleoplasmchromosomenucleolusmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuslipid dropletmicrotubule organizing centercytosolribosomecytoskeletonplasma membraneciliumplastidthylakoidexternal encapsulating structureextracellular matrixcytoplasmic vesicleorganelleother cellular component
Cell color indicative of number of GO terms
AspectTerm
Cellular ComponentSin3-type complex
Biological Processcardiac ventricle development
Biological Processfloor plate formation
Biological Processheart development
Biological Processlarval locomotory behavior
Biological Processnegative regulation of transcription by RNA polymerase II
Biological Processthigmotaxis

Keywords

Names & Taxonomy

Protein names

  • Submitted names
    • Histone deacetylase complex subunit SAP130
      (EC:3.2.1.3
      )
    • Sin3A-associated protein a

Gene names

    • Name
      sap130a
    • Synonyms
      zgc:162722

Organism names

  • Taxonomic identifier
  • Strain
    • Tuebingen
  • Taxonomic lineage
    Eukaryota > Metazoa > Chordata > Craniata > Vertebrata > Euteleostomi > Actinopterygii > Neopterygii > Teleostei > Ostariophysi > Cypriniformes > Danionidae > Danioninae > Danio

Accessions

  • Primary accession
    F1REK0
  • Secondary accessions
    • A0A8M1NEX8

Proteomes

    • Identifier
    • Component
      Alternate scaffold 6, Chromosome 6

Organism-specific databases

Subcellular Location

Keywords

  • Cellular component

PTM/Processing

Proteomic databases

Expression

Gene expression databases

Interaction

Protein-protein interaction databases

Family & Domains

Features

Showing features for region, compositional bias, domain.

TypeIDPosition(s)Description
Region18-87Disordered
Compositional bias64-78Polar residues
Region461-482Disordered
Compositional bias465-482Polar residues
Domain651-1055Histone deacetylase complex subunit SAP130 C-terminal
Region681-704Disordered
Region813-902Disordered
Compositional bias821-849Polar residues
Compositional bias878-902Basic and acidic residues

Sequence similarities

Belongs to the SAP130 family.

Phylogenomic databases

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    1,072
  • Mass (Da)
    112,708
  • Last updated
    2011-05-03 v1
  • Checksum
    4C7210E1B03A3DB2
MQYSHYVVGIASDIRQKMSSQQFPRAALPPSAAAAAPGQASADSSGAGTHSVGSEDSSREVDHPQDPSLGSSSGSIGGLASFRDDKQETVVVRPYPQVQAPGQSPALPQHVPIQPSPPVTLAAPSVHLLQGQQPSLTEGSVKATLKPPMPSRLIAPAPALSQGHIPVPAKVSGHITVPLESSIAPASIPVATISGQQGQSNLHQLMATNVQIFRGSAPLQIGSPATPHTFTSHLPRGAAAAAVMSSTKGPNVLRPAGGGSAGPSQPAAVQHIIHQPIQSRSLVTTSTAVLPTMVAPIPAARTQSPVINTTVTHATEMVHGRPVAIHPPPATINIQRPPTPRDTATRITLPSHPAIGGQKAQPPHTVTQKPIFNTVTPVAAATVAPILATNTVPSATTTGSAAHTQMTSSTIVTMTMASHSSHATAVTTSAIPVAKVVPQPIAHTSHSPRIQQEYSGERPNLIPISGHRSSPNPVTMEARSDNRPSVPVQFQYFLPTYPSPSYPLSHTYTPITSSVSTIRPYPVTAPAQSSALPAQTGVGVATTMHLNQMQLMALPSAQISTQNIQPASMTAQGIQPAPIGVQGLHAAAPISTQTVQQAPVTTQQPQSEAKPAGVVLAESPAFVTNPIGSTFSGTQPVTTIVQTHTGAGAPTLVSSPRPSILRKKPVTEGAVRKCLIQAQPSEPNAGRVDSGIRLSGSPRPAGVKPKPDIHVAMAPPVMAAVEALVGHVGEQQTLSTPVQHHSQAIPTLLAPPAPAPPSQPTAVLSALPATMAVTPPVPASMANAVASPTQPAASSTAALSSTLPEVKIKQEAEPMDTSQAVPLAPSLTGPAPSLSSQSSTLTVSSQPGELLPGASPRKKPRKQQHVISTEETEMVETNSTDEERASSRAPGNRMERHESPPREYVDEDGVRYVPVRPRPPHTHLRQYRNPWKAAYHHFQRYSDIRVKEEKKGSLQDMANQRGVACRAQGWKVHLCAAQLLQLSNLEHDVYSRLTTLQEGLIPKKRAGADDDLHRINELIQGNMQRCKLVMDQVTEARDTMMKVLDHKDRVLKLLNKNGTPKKSSKLKRKERA

Computationally mapped potential isoform sequences

There are 3 potential isoforms mapped to this entry

View all
EntryEntry nameGene nameLength
A0A8M6YZH6A0A8M6YZH6_DANREsap130a1039
A0A8M3ATE0A0A8M3ATE0_DANREsap130a1055
A0A8M2BD75A0A8M2BD75_DANREsap130a1071

Features

Showing features for compositional bias.

TypeIDPosition(s)Description
Compositional bias64-78Polar residues
Compositional bias465-482Polar residues
Compositional bias821-849Polar residues
Compositional bias878-902Basic and acidic residues

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
CR626936
EMBL· GenBank· DDBJ
-Genomic DNA No translation available.
CR626940
EMBL· GenBank· DDBJ
-Genomic DNA No translation available.

Genome annotation databases

Similar Proteins

Disclaimer

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