F1REK0 · F1REK0_DANRE
- ProteinHistone deacetylase complex subunit SAP130
- Genesap130a
- StatusUniProtKB unreviewed (TrEMBL)
- Amino acids1072 (go to sequence)
- Protein existenceEvidence at protein level
- Annotation score3/5
Function
GO annotations
all annotations | all molecular function | virus receptor activity | dna binding | rna binding | cytoskeletal motor activity | catalytic activity | gtpase activity | structural molecule activity | transporter activity | cytoskeletal protein binding | lipid binding | cyclase activity | antioxidant activity | oxidoreductase activity | transferase activity | hydrolase activity | lyase activity | isomerase activity | ligase activity | protein tag activity | cargo receptor activity | histone binding | protein folding chaperone | translation regulator activity | nutrient reservoir activity | receptor ligand activity | molecular transducer activity | molecular adaptor activity | toxin activity | cell adhesion mediator activity | molecular function regulator activity | virus coreceptor activity | catalytic activity, acting on a protein | catalytic activity, acting on dna | catalytic activity, acting on rna | molecular carrier activity | transcription regulator activity | general transcription initiation factor activity | molecular sensor activity | molecular sequestering activity | atp-dependent activity | other molecular function | all biological process | mitotic cell cycle | cytokinesis | cytoplasmic translation | immune system process | muscle system process | circulatory system process | renal system process | respiratory system process | carbohydrate metabolic process | generation of precursor metabolites and energy | dna replication | dna repair | dna recombination | chromatin organization | dna-templated transcription | regulation of dna-templated transcription | trna metabolic process | protein folding | protein glycosylation | amino acid metabolic process | modified amino acid metabolic process | lipid metabolic process | vitamin metabolic process | sulfur compound metabolic process | intracellular protein transport | nucleocytoplasmic transport | autophagy | inflammatory response | mitochondrion organization | cytoskeleton organization | microtubule-based movement | peroxisome organization | lysosome organization | chromosome segregation | cell adhesion | establishment or maintenance of cell polarity | programmed cell death | photosynthesis | mrna metabolic process | snrna metabolic process | vesicle-mediated transport | reproductive process | digestive system process | signaling | cell differentiation | protein catabolic process | extracellular matrix organization | regulatory ncrna-mediated gene silencing | telomere organization | cell junction organization | wound healing | ribosome biogenesis | cilium organization | anatomical structure development | cell motility | nervous system process | endocrine process | protein maturation | transmembrane transport | nucleobase-containing small molecule metabolic process | hepaticobiliary system process | membrane organization | protein-containing complex assembly | cell wall organization or biogenesis | nitrogen cycle metabolic process | protein localization to plasma membrane | defense response to other organism | detoxification | meiotic nuclear division | mitotic nuclear division | mitochondrial gene expression | carbohydrate derivative metabolic process | other biological process | all cellular component | nuclear chromosome | extracellular region | extracellular space | cell wall | nucleus | nuclear envelope | nucleoplasm | chromosome | nucleolus | mitochondrion | lysosome | endosome | vacuole | peroxisome | endoplasmic reticulum | golgi apparatus | lipid droplet | microtubule organizing center | cytosol | ribosome | cytoskeleton | plasma membrane | cilium | plastid | thylakoid | external encapsulating structure | extracellular matrix | cytoplasmic vesicle | organelle | other cellular component | |||
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Aspect | Term | |
---|---|---|
Cellular Component | Sin3-type complex | |
Biological Process | cardiac ventricle development | |
Biological Process | floor plate formation | |
Biological Process | heart development | |
Biological Process | larval locomotory behavior | |
Biological Process | negative regulation of transcription by RNA polymerase II | |
Biological Process | thigmotaxis |
Keywords
- Molecular function
- Biological process
Names & Taxonomy
Protein names
- Submitted names
Gene names
Organism names
- Strain
- Taxonomic lineageEukaryota > Metazoa > Chordata > Craniata > Vertebrata > Euteleostomi > Actinopterygii > Neopterygii > Teleostei > Ostariophysi > Cypriniformes > Danionidae > Danioninae > Danio
Accessions
- Primary accessionF1REK0
- Secondary accessions
Proteomes
Organism-specific databases
Subcellular Location
PTM/Processing
Proteomic databases
Expression
Gene expression databases
Interaction
Protein-protein interaction databases
Structure
Family & Domains
Features
Showing features for region, compositional bias, domain.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Region | 18-87 | Disordered | ||||
Sequence: MSSQQFPRAALPPSAAAAAPGQASADSSGAGTHSVGSEDSSREVDHPQDPSLGSSSGSIGGLASFRDDKQ | ||||||
Compositional bias | 64-78 | Polar residues | ||||
Sequence: PQDPSLGSSSGSIGG | ||||||
Region | 461-482 | Disordered | ||||
Sequence: LIPISGHRSSPNPVTMEARSDN | ||||||
Compositional bias | 465-482 | Polar residues | ||||
Sequence: SGHRSSPNPVTMEARSDN | ||||||
Domain | 651-1055 | Histone deacetylase complex subunit SAP130 C-terminal | ||||
Sequence: TLVSSPRPSILRKKPVTEGAVRKCLIQAQPSEPNAGRVDSGIRLSGSPRPAGVKPKPDIHVAMAPPVMAAVEALVGHVGEQQTLSTPVQHHSQAIPTLLAPPAPAPPSQPTAVLSALPATMAVTPPVPASMANAVASPTQPAASSTAALSSTLPEVKIKQEAEPMDTSQAVPLAPSLTGPAPSLSSQSSTLTVSSQPGELLPGASPRKKPRKQQHVISTEETEMVETNSTDEERASSRAPGNRMERHESPPREYVDEDGVRYVPVRPRPPHTHLRQYRNPWKAAYHHFQRYSDIRVKEEKKGSLQDMANQRGVACRAQGWKVHLCAAQLLQLSNLEHDVYSRLTTLQEGLIPKKRAGADDDLHRINELIQGNMQRCKLVMDQVTEARDTMMKVLDHKDRVLKLLN | ||||||
Region | 681-704 | Disordered | ||||
Sequence: SEPNAGRVDSGIRLSGSPRPAGVK | ||||||
Region | 813-902 | Disordered | ||||
Sequence: EPMDTSQAVPLAPSLTGPAPSLSSQSSTLTVSSQPGELLPGASPRKKPRKQQHVISTEETEMVETNSTDEERASSRAPGNRMERHESPPR | ||||||
Compositional bias | 821-849 | Polar residues | ||||
Sequence: VPLAPSLTGPAPSLSSQSSTLTVSSQPGE | ||||||
Compositional bias | 878-902 | Basic and acidic residues | ||||
Sequence: NSTDEERASSRAPGNRMERHESPPR |
Sequence similarities
Belongs to the SAP130 family.
Phylogenomic databases
Family and domain databases
Sequence
- Sequence statusComplete
- Length1,072
- Mass (Da)112,708
- Last updated2011-05-03 v1
- Checksum4C7210E1B03A3DB2
Computationally mapped potential isoform sequences
There are 3 potential isoforms mapped to this entry
Entry | Entry name | Gene name | Length | ||
---|---|---|---|---|---|
A0A8M6YZH6 | A0A8M6YZH6_DANRE | sap130a | 1039 | ||
A0A8M3ATE0 | A0A8M3ATE0_DANRE | sap130a | 1055 | ||
A0A8M2BD75 | A0A8M2BD75_DANRE | sap130a | 1071 |
Features
Showing features for compositional bias.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Compositional bias | 64-78 | Polar residues | ||||
Sequence: PQDPSLGSSSGSIGG | ||||||
Compositional bias | 465-482 | Polar residues | ||||
Sequence: SGHRSSPNPVTMEARSDN | ||||||
Compositional bias | 821-849 | Polar residues | ||||
Sequence: VPLAPSLTGPAPSLSSQSSTLTVSSQPGE | ||||||
Compositional bias | 878-902 | Basic and acidic residues | ||||
Sequence: NSTDEERASSRAPGNRMERHESPPR |
Keywords
- Technical term
Sequence databases
Nucleotide Sequence | Protein Sequence | Molecule Type | Status | |
---|---|---|---|---|
CR626936 EMBL· GenBank· DDBJ | - | Genomic DNA | No translation available. | |
CR626940 EMBL· GenBank· DDBJ | - | Genomic DNA | No translation available. |