F1R6L6 · F1R6L6_DANRE
- ProteinNucleolin
- Genencl
- StatusUniProtKB unreviewed (TrEMBL)
- Amino acids705 (go to sequence)
- Protein existenceEvidence at protein level
- Annotation score4/5
Function
GO annotations
all annotations | all molecular function | virus receptor activity | dna binding | rna binding | cytoskeletal motor activity | catalytic activity | gtpase activity | structural molecule activity | transporter activity | cytoskeletal protein binding | lipid binding | cyclase activity | antioxidant activity | oxidoreductase activity | transferase activity | hydrolase activity | lyase activity | isomerase activity | ligase activity | protein tag activity | cargo receptor activity | histone binding | protein folding chaperone | translation regulator activity | nutrient reservoir activity | receptor ligand activity | molecular transducer activity | molecular adaptor activity | toxin activity | cell adhesion mediator activity | molecular function regulator activity | virus coreceptor activity | catalytic activity, acting on a protein | catalytic activity, acting on dna | catalytic activity, acting on rna | molecular carrier activity | transcription regulator activity | general transcription initiation factor activity | molecular sensor activity | molecular sequestering activity | atp-dependent activity | other molecular function | all biological process | mitotic cell cycle | cytokinesis | cytoplasmic translation | immune system process | muscle system process | circulatory system process | renal system process | respiratory system process | carbohydrate metabolic process | generation of precursor metabolites and energy | dna replication | dna repair | dna recombination | chromatin organization | dna-templated transcription | regulation of dna-templated transcription | trna metabolic process | protein folding | protein glycosylation | amino acid metabolic process | modified amino acid metabolic process | lipid metabolic process | vitamin metabolic process | sulfur compound metabolic process | intracellular protein transport | nucleocytoplasmic transport | autophagy | inflammatory response | mitochondrion organization | cytoskeleton organization | microtubule-based movement | peroxisome organization | lysosome organization | chromosome segregation | cell adhesion | establishment or maintenance of cell polarity | programmed cell death | photosynthesis | mrna metabolic process | snrna metabolic process | vesicle-mediated transport | reproductive process | digestive system process | signaling | cell differentiation | protein catabolic process | extracellular matrix organization | regulatory ncrna-mediated gene silencing | telomere organization | cell junction organization | wound healing | ribosome biogenesis | cilium organization | anatomical structure development | cell motility | nervous system process | endocrine process | protein maturation | transmembrane transport | nucleobase-containing small molecule metabolic process | hepaticobiliary system process | membrane organization | protein-containing complex assembly | cell wall organization or biogenesis | nitrogen cycle metabolic process | protein localization to plasma membrane | defense response to other organism | detoxification | meiotic nuclear division | mitotic nuclear division | mitochondrial gene expression | carbohydrate derivative metabolic process | other biological process | all cellular component | nuclear chromosome | extracellular region | extracellular space | cell wall | nucleus | nuclear envelope | nucleoplasm | chromosome | nucleolus | mitochondrion | lysosome | endosome | vacuole | peroxisome | endoplasmic reticulum | golgi apparatus | lipid droplet | microtubule organizing center | cytosol | ribosome | cytoskeleton | plasma membrane | cilium | plastid | thylakoid | external encapsulating structure | extracellular matrix | cytoplasmic vesicle | organelle | other cellular component | |||
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Aspect | Term | |
---|---|---|
Cellular Component | cytoplasm | |
Cellular Component | nucleolus | |
Cellular Component | nucleus | |
Cellular Component | ribonucleoprotein complex | |
Molecular Function | DNA binding | |
Molecular Function | mRNA binding | |
Biological Process | heart looping | |
Biological Process | ossification | |
Biological Process | regulation of cartilage development | |
Biological Process | regulation of fibroblast growth factor receptor signaling pathway | |
Biological Process | rRNA processing | |
Biological Process | rRNA transcription |
Keywords
- Molecular function
Names & Taxonomy
Protein names
- Recommended nameNucleolin
Gene names
Organism names
- Strain
- Taxonomic lineageEukaryota > Metazoa > Chordata > Craniata > Vertebrata > Euteleostomi > Actinopterygii > Neopterygii > Teleostei > Ostariophysi > Cypriniformes > Danionidae > Danioninae > Danio
Accessions
- Primary accessionF1R6L6
- Secondary accessions
Proteomes
Organism-specific databases
Subcellular Location
PTM/Processing
Expression
Gene expression databases
Structure
Family & Domains
Features
Showing features for compositional bias, region, domain.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Compositional bias | 1-25 | Basic and acidic residues | ||||
Sequence: MVKLAKAAKKDAPPKKKAPPPPKEV | ||||||
Region | 1-286 | Disordered | ||||
Sequence: MVKLAKAAKKDAPPKKKAPPPPKEVEEESSEEDSDDDEEEEAPPVKAVAKKNAAPVKAVKNGKAAAKQESEDEDDDDEDDESEEEAPPPKKAAKAPAKAAAPAKKAAPAEESSEEDDDDDDDDESEEEAPPPKKAPAKATPAKATPAKKAAPVKKAAPAEESEDDDDDEDESEEEEAPPPKKAAAAAKPAAKAPAAKEESDEEEDDDEEEDDSEEEEMDTTPAPKAKKAGMVKAKEESEEEDDDDEEDDDDEEEEETPATPAKRKAETKKEKGTPPAKKAKTDGEG | ||||||
Compositional bias | 26-42 | Acidic residues | ||||
Sequence: EEESSEEDSDDDEEEEA | ||||||
Compositional bias | 70-84 | Acidic residues | ||||
Sequence: SEDEDDDDEDDESEE | ||||||
Compositional bias | 112-127 | Acidic residues | ||||
Sequence: SSEEDDDDDDDDESEE | ||||||
Compositional bias | 161-175 | Acidic residues | ||||
Sequence: ESEDDDDDEDESEEE | ||||||
Compositional bias | 199-218 | Acidic residues | ||||
Sequence: ESDEEEDDDEEEDDSEEEEM | ||||||
Compositional bias | 219-236 | Basic and acidic residues | ||||
Sequence: DTTPAPKAKKAGMVKAKE | ||||||
Compositional bias | 237-256 | Acidic residues | ||||
Sequence: ESEEEDDDDEEDDDDEEEEE | ||||||
Compositional bias | 257-279 | Basic and acidic residues | ||||
Sequence: TPATPAKRKAETKKEKGTPPAKK | ||||||
Domain | 287-363 | RRM | ||||
Sequence: FSLFLGNLNNNKDFDELKSAISKFFSKEGLEIQDVRLGGTKKFGYVDFASEEELQKALELNGKKLLGQPVKLDKARS | ||||||
Domain | 377-451 | RRM | ||||
Sequence: RTLFVKNLPYSITQDDLREIFDQAVDIRVPMGNTGTSRGIAYIEFKTEAIAEKALEEAQGSDVQGRSIIVDFTGD | ||||||
Domain | 465-538 | RRM | ||||
Sequence: KVLVVNNLAFSASEDSLQSVFEKAVSIRIPQNNGRPKGYAFVEFENVEDSKEALENCNNTDIEGRSIRLEYSQN | ||||||
Domain | 554-629 | RRM | ||||
Sequence: KTLFVKGLSDDTTDQTLKDSFDGAIAARIATDRDTGSSKGFGFVDFDNEQDCKAAKEAMDDGEIDGNKVTLDYAKP | ||||||
Region | 625-705 | Disordered | ||||
Sequence: DYAKPKGEGGRGGFGGGRGGFGGRGGGRGGFGGRGGGGRGGGFRGGRGGRGGGGGFRGGRGGGGRGGFGDRPQGKKIKFDD |
Keywords
- Domain
Phylogenomic databases
Family and domain databases
Sequence
- Sequence statusComplete
- Length705
- Mass (Da)75,061
- Last updated2011-05-03 v1
- Checksum9D184974F3967733
Computationally mapped potential isoform sequences
There are 2 potential isoforms mapped to this entry
Entry | Entry name | Gene name | Length | ||
---|---|---|---|---|---|
B8JLQ3 | B8JLQ3_DANRE | ncl | 704 | ||
A0A8M2BHX2 | A0A8M2BHX2_DANRE | ncl | 657 |
Features
Showing features for compositional bias.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Compositional bias | 1-25 | Basic and acidic residues | ||||
Sequence: MVKLAKAAKKDAPPKKKAPPPPKEV | ||||||
Compositional bias | 26-42 | Acidic residues | ||||
Sequence: EEESSEEDSDDDEEEEA | ||||||
Compositional bias | 70-84 | Acidic residues | ||||
Sequence: SEDEDDDDEDDESEE | ||||||
Compositional bias | 112-127 | Acidic residues | ||||
Sequence: SSEEDDDDDDDDESEE | ||||||
Compositional bias | 161-175 | Acidic residues | ||||
Sequence: ESEDDDDDEDESEEE | ||||||
Compositional bias | 199-218 | Acidic residues | ||||
Sequence: ESDEEEDDDEEEDDSEEEEM | ||||||
Compositional bias | 219-236 | Basic and acidic residues | ||||
Sequence: DTTPAPKAKKAGMVKAKE | ||||||
Compositional bias | 237-256 | Acidic residues | ||||
Sequence: ESEEEDDDDEEDDDDEEEEE | ||||||
Compositional bias | 257-279 | Basic and acidic residues | ||||
Sequence: TPATPAKRKAETKKEKGTPPAKK |
Keywords
- Technical term
Sequence databases
Nucleotide Sequence | Protein Sequence | Molecule Type | Status | |
---|---|---|---|---|
CU469540 EMBL· GenBank· DDBJ | - | Genomic DNA | No translation available. | |
CU539057 EMBL· GenBank· DDBJ | - | Genomic DNA | No translation available. |