E1JU59 · E1JU59_SOLFR
- ProteinBifunctional enzyme IspD/IspF
- GeneispDF
- StatusUniProtKB unreviewed (TrEMBL)
- Amino acids400 (go to sequence)
- Protein existenceInferred from homology
- Annotation score4/5
Function
function
Bifunctional enzyme that catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate (MEP) (IspD), and catalyzes the conversion of 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP) (IspF).
Catalytic activity
- 2-C-methyl-D-erythritol 4-phosphate + CTP + H+ = 4-CDP-2-C-methyl-D-erythritol + diphosphate
Cofactor
Pathway
Isoprenoid biosynthesis; isopentenyl diphosphate biosynthesis via DXP pathway; isopentenyl diphosphate from 1-deoxy-D-xylulose 5-phosphate: step 2/6.
Isoprenoid biosynthesis; isopentenyl diphosphate biosynthesis via DXP pathway; isopentenyl diphosphate from 1-deoxy-D-xylulose 5-phosphate: step 4/6.
Features
Showing features for site, binding site.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Site | 15 | Transition state stabilizer | ||||
Sequence: R | ||||||
Site | 25 | Transition state stabilizer | ||||
Sequence: K | ||||||
Site | 161 | Positions MEP for the nucleophilic attack | ||||
Sequence: R | ||||||
Site | 216 | Positions MEP for the nucleophilic attack | ||||
Sequence: K | ||||||
Binding site | 242 | a divalent metal cation (UniProtKB | ChEBI) | ||||
Sequence: D | ||||||
Binding site | 242-244 | 4-CDP-2-C-methyl-D-erythritol 2-phosphate (UniProtKB | ChEBI) | ||||
Sequence: DVH | ||||||
Binding site | 244 | a divalent metal cation (UniProtKB | ChEBI) | ||||
Sequence: H | ||||||
Site | 276 | Transition state stabilizer | ||||
Sequence: H | ||||||
Binding site | 276-277 | 4-CDP-2-C-methyl-D-erythritol 2-phosphate (UniProtKB | ChEBI) | ||||
Sequence: HS | ||||||
Binding site | 284 | a divalent metal cation (UniProtKB | ChEBI) | ||||
Sequence: H | ||||||
Binding site | 298-300 | 4-CDP-2-C-methyl-D-erythritol 2-phosphate (UniProtKB | ChEBI) | ||||
Sequence: DIG | ||||||
Binding site | 303-307 | 4-CDP-2-C-methyl-D-erythritol 2-phosphate (UniProtKB | ChEBI) | ||||
Sequence: FPDSN | ||||||
Binding site | 374-377 | 4-CDP-2-C-methyl-D-erythritol 2-phosphate (UniProtKB | ChEBI) | ||||
Sequence: TTEE | ||||||
Site | 375 | Transition state stabilizer | ||||
Sequence: T | ||||||
Binding site | 381 | 4-CDP-2-C-methyl-D-erythritol 2-phosphate (UniProtKB | ChEBI) | ||||
Sequence: F |
GO annotations
Aspect | Term | |
---|---|---|
Molecular Function | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity | |
Molecular Function | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity | |
Molecular Function | metal ion binding | |
Biological Process | isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | |
Biological Process | terpenoid biosynthetic process |
Keywords
- Molecular function
- Biological process
- Ligand
Enzyme and pathway databases
Names & Taxonomy
Protein names
- Recommended nameBifunctional enzyme IspD/IspF
Including 2 domains:
- Recommended name2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
- EC number
- Alternative names
- Recommended name2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
- EC number
- Short namesMECDP-synthase ; MECPP-synthase ; MECPS
Gene names
Organism names
- Strain
- Taxonomic lineageBacteria > Thermodesulfobacteriota > Desulfovibrionia > Desulfovibrionales > Desulfovibrionaceae > Solidesulfovibrio
Accessions
- Primary accessionE1JU59
Proteomes
Interaction
Protein-protein interaction databases
Structure
Family & Domains
Features
Showing features for region, domain.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Region | 1-235 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | ||||
Sequence: MSVWTVLLAAGSGTRLAEASGGVKKQFLRLGGKPLYWRSLSTFARCPDIAGVMVVFPPADLDAARKALAGLLAAHDPGVAVLTTAGGVRRQDSVQNGLAALPSDCRFVLVHDAARPFVDPALVGRVITALREGHEAVIPVLPVTDTIKEVREETVLATFDRSRLAAVQTPQGFDAALLRQAFAHAGEEFTVTDDASLVEHLGRPVHTVPGHPDNRKITNPEDLALLEDATPSPVP | ||||||
Region | 236-400 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | ||||
Sequence: VVGYGYDVHRYANPAHPGKQPARPMKLGGYPILGAPEVLAHSDGDVLLHALTDAILGCVAGGDIGQLFPDSNPDFDNMASGVFVSEALLLAREAGLTITHVDLTIIAQVPRIGPHAQAIRLNVAALLSLDKSRVNLKATTEEGLGFTGEKKGIKAIALVTGWKRS | ||||||
Domain | 237-395 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | ||||
Sequence: VGYGYDVHRYANPAHPGKQPARPMKLGGYPILGAPEVLAHSDGDVLLHALTDAILGCVAGGDIGQLFPDSNPDFDNMASGVFVSEALLLAREAGLTITHVDLTIIAQVPRIGPHAQAIRLNVAALLSLDKSRVNLKATTEEGLGFTGEKKGIKAIALVT |
Sequence similarities
Belongs to the IspD/TarI cytidylyltransferase family. IspD subfamily.
In the C-terminal section; belongs to the IspF family.
In the N-terminal section; belongs to the IspD/TarI cytidylyltransferase family. IspD subfamily.
Phylogenomic databases
Family and domain databases
Sequence
- Sequence statusComplete
- Length400
- Mass (Da)42,233
- Last updated2010-11-30 v1
- Checksum176C435E64197899