D8QNI1 · CSPLH_SELML
- ProteinCASP-like protein 5A1
- StatusUniProtKB reviewed (Swiss-Prot)
- Amino acids176 (go to sequence)
- Protein existenceEvidence at transcript level
- Annotation score2/5
Function
GO annotations
all annotations | all molecular function | nucleotide binding | molecular_function | nucleic acid binding | dna binding | chromatin binding | dna-binding transcription factor activity | rna binding | cytoskeletal motor activity | catalytic activity | nuclease activity | signaling receptor binding | structural molecule activity | transporter activity | binding | protein binding | translation factor activity, rna binding | lipid binding | kinase activity | transferase activity | hydrolase activity | oxygen binding | enzyme regulator activity | carbohydrate binding | signaling receptor activity | translation regulator activity | transcription regulator activity | other molecular function | all biological process | carbohydrate metabolic process | generation of precursor metabolites and energy | nucleobase-containing compound metabolic process | dna metabolic process | translation | lipid metabolic process | transport | response to stress | cell cycle | cell communication | signal transduction | cell-cell signaling | multicellular organism development | circadian rhythm | biological_process | metabolic process | catabolic process | biosynthetic process | response to light stimulus | response to external stimulus | tropism | response to biotic stimulus | response to abiotic stimulus | response to endogenous stimulus | embryo development | post-embryonic development | fruit ripening | abscission | pollination | flower development | cellular process | programmed cell death | photosynthesis | cellular component organization | cell growth | protein metabolic process | cellular homeostasis | secondary metabolic process | reproductive process | cell differentiation | protein modification process | growth | epigenetic regulation of gene expression | response to chemical | anatomical structure development | regulation of molecular function | other biological process | all cellular component | cellular_component | extracellular region | cell wall | intracellular anatomical structure | nucleus | nuclear envelope | nucleoplasm | nucleolus | cytoplasm | mitochondrion | lysosome | endosome | vacuole | peroxisome | endoplasmic reticulum | golgi apparatus | cytosol | ribosome | cytoskeleton | plasma membrane | chloroplast | plastid | thylakoid | membrane | external encapsulating structure | other cellular component | |||
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Aspect | Term | |
---|---|---|
Cellular Component | membrane | |
Cellular Component | plasma membrane |
Names & Taxonomy
Protein names
- Recommended nameCASP-like protein 5A1
- Short namesSmCASPL5A1
Gene names
Organism names
- Taxonomic lineageEukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Lycopodiopsida > Selaginellales > Selaginellaceae > Selaginella
Accessions
- Primary accessionD8QNI1
Proteomes
Genome annotation databases
Subcellular Location
UniProt Annotation
GO Annotation
Cell membrane ; Multi-pass membrane protein
Features
Showing features for topological domain, transmembrane.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Topological domain | 1-45 | Cytoplasmic | ||||
Sequence: MDASHPAVYPVGVPPTAVDPPPRVRMKDYEGMPSTLGGLVLRSGQ | ||||||
Transmembrane | 46-66 | Helical | ||||
Sequence: FACAVTALSIMISIPDFSSVT | ||||||
Topological domain | 67 | Extracellular | ||||
Sequence: A | ||||||
Transmembrane | 68-88 | Helical | ||||
Sequence: FCYLVAAMALQLLWSVSLAVV | ||||||
Topological domain | 89-102 | Cytoplasmic | ||||
Sequence: DGYALLLRRTLHNP | ||||||
Transmembrane | 103-123 | Helical | ||||
Sequence: VLLSLLVIGDWVTSTLSLAAA | ||||||
Topological domain | 124-151 | Extracellular | ||||
Sequence: CSSAGITVLIDSDLAQCAHNHCGRYEAA | ||||||
Transmembrane | 152-172 | Helical | ||||
Sequence: VAMAFLTWFLVSLSFFFSFWL | ||||||
Topological domain | 173-176 | Cytoplasmic | ||||
Sequence: LATR |
Keywords
- Cellular component
PTM/Processing
Features
Showing features for chain.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Chain | PRO_0000418682 | 1-176 | CASP-like protein 5A1 | |||
Sequence: MDASHPAVYPVGVPPTAVDPPPRVRMKDYEGMPSTLGGLVLRSGQFACAVTALSIMISIPDFSSVTAFCYLVAAMALQLLWSVSLAVVDGYALLLRRTLHNPVLLSLLVIGDWVTSTLSLAAACSSAGITVLIDSDLAQCAHNHCGRYEAAVAMAFLTWFLVSLSFFFSFWLLATR |
Interaction
Structure
Family & Domains
Sequence similarities
Belongs to the Casparian strip membrane proteins (CASP) family.
Keywords
- Domain
Phylogenomic databases
Family and domain databases
Sequence
- Sequence statusComplete
- Length176
- Mass (Da)18,871
- Last updated2010-10-05 v1
- Checksum5155A5CFD33F6850
Keywords
- Technical term
Sequence databases
Nucleotide Sequence | Protein Sequence | Molecule Type | Status | |
---|---|---|---|---|
GL377565 EMBL· GenBank· DDBJ | EFJ38105.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
FE454478 EMBL· GenBank· DDBJ | - | mRNA | No translation available. |