D7KI68 · D7KI68_ARALL
- ProteinAuxin response factor
- StatusUniProtKB unreviewed (TrEMBL)
- Amino acids903 (go to sequence)
- Protein existenceInferred from homology
- Annotation score3/5
Function
function
Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
GO annotations
all annotations | all molecular function | nucleotide binding | molecular_function | nucleic acid binding | dna binding | chromatin binding | dna-binding transcription factor activity | rna binding | cytoskeletal motor activity | catalytic activity | nuclease activity | signaling receptor binding | structural molecule activity | transporter activity | binding | protein binding | translation factor activity, rna binding | lipid binding | kinase activity | transferase activity | hydrolase activity | oxygen binding | enzyme regulator activity | carbohydrate binding | signaling receptor activity | translation regulator activity | transcription regulator activity | other molecular function | all biological process | carbohydrate metabolic process | generation of precursor metabolites and energy | nucleobase-containing compound metabolic process | dna metabolic process | translation | lipid metabolic process | transport | response to stress | cell cycle | cell communication | signal transduction | cell-cell signaling | multicellular organism development | circadian rhythm | biological_process | metabolic process | catabolic process | biosynthetic process | response to light stimulus | response to external stimulus | tropism | response to biotic stimulus | response to abiotic stimulus | response to endogenous stimulus | embryo development | post-embryonic development | fruit ripening | abscission | pollination | flower development | cellular process | programmed cell death | photosynthesis | cellular component organization | cell growth | protein metabolic process | cellular homeostasis | secondary metabolic process | reproductive process | cell differentiation | protein modification process | growth | epigenetic regulation of gene expression | response to chemical | anatomical structure development | regulation of molecular function | other biological process | all cellular component | cellular_component | extracellular region | cell wall | intracellular anatomical structure | nucleus | nuclear envelope | nucleoplasm | nucleolus | cytoplasm | mitochondrion | lysosome | endosome | vacuole | peroxisome | endoplasmic reticulum | golgi apparatus | cytosol | ribosome | cytoskeleton | plasma membrane | chloroplast | plastid | thylakoid | membrane | external encapsulating structure | other cellular component | |||
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Aspect | Term | |
---|---|---|
Cellular Component | nucleus | |
Molecular Function | identical protein binding | |
Molecular Function | transcription cis-regulatory region binding | |
Biological Process | auxin-activated signaling pathway | |
Biological Process | flower development | |
Biological Process | leaf vascular tissue pattern formation | |
Biological Process | longitudinal axis specification | |
Biological Process | meristem development | |
Biological Process | regulation of DNA-templated transcription | |
Biological Process | root development |
Keywords
- Molecular function
- Biological process
Names & Taxonomy
Protein names
- Recommended nameAuxin response factor
Gene names
Organism names
- Strain
- Taxonomic lineageEukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > eudicotyledons > Gunneridae > Pentapetalae > rosids > malvids > Brassicales > Brassicaceae > Camelineae > Arabidopsis
Accessions
- Primary accessionD7KI68
Proteomes
Genome annotation databases
Subcellular Location
Interaction
Structure
Family & Domains
Features
Showing features for domain, region, compositional bias.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Domain | 159-261 | TF-B3 | ||||
Sequence: FCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTAQPPTQELVVRDLHENTWTFRHIYRGQPKRHLLTTGWSLFVGSKRLRAGDSVLFIRDEKSQLMVGVRRAN | ||||||
Region | 494-544 | Disordered | ||||
Sequence: MSRKSEMLQPQNKLTVNPSASNSSGQEQNLSQSMSAPAKPDNSTLSGCSSG | ||||||
Compositional bias | 495-543 | Polar residues | ||||
Sequence: SRKSEMLQPQNKLTVNPSASNSSGQEQNLSQSMSAPAKPDNSTLSGCSS | ||||||
Region | 753-775 | Disordered | ||||
Sequence: QDFPDNSGGTGTSSSNVDFDDSS | ||||||
Domain | 794-878 | PB1 | ||||
Sequence: RTYTKVQKTGSVGRSIDVTSFKDYKELKSAIECMFGLEGLLTQPQSSGWKLVYVDYESDVLLVGDDPWEEFVGCVRCIRILSPTE |
Sequence similarities
Belongs to the ARF family.
Phylogenomic databases
Family and domain databases
Sequence
- Sequence statusComplete
- Length903
- Mass (Da)99,570
- Last updated2010-08-10 v1
- Checksum13BE4245D12D21E6
Features
Showing features for compositional bias.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Compositional bias | 495-543 | Polar residues | ||||
Sequence: SRKSEMLQPQNKLTVNPSASNSSGQEQNLSQSMSAPAKPDNSTLSGCSS |
Keywords
- Technical term
Sequence databases
Nucleotide Sequence | Protein Sequence | Molecule Type | Status | |
---|---|---|---|---|
GL348713 EMBL· GenBank· DDBJ | EFH66615.1 EMBL· GenBank· DDBJ | Genomic DNA |