D7KEU5 · D7KEU5_ARALL
- ProteinZinc finger (CCCH-type) family protein
- StatusUniProtKB unreviewed (TrEMBL)
- Amino acids631 (go to sequence)
- Protein existencePredicted
- Annotation score3/5
Function
GO annotations
all annotations | all molecular function | nucleotide binding | molecular_function | nucleic acid binding | dna binding | chromatin binding | dna-binding transcription factor activity | rna binding | cytoskeletal motor activity | catalytic activity | nuclease activity | signaling receptor binding | structural molecule activity | transporter activity | binding | protein binding | translation factor activity, rna binding | lipid binding | kinase activity | transferase activity | hydrolase activity | oxygen binding | enzyme regulator activity | carbohydrate binding | signaling receptor activity | translation regulator activity | transcription regulator activity | other molecular function | all biological process | carbohydrate metabolic process | generation of precursor metabolites and energy | nucleobase-containing compound metabolic process | dna metabolic process | translation | lipid metabolic process | transport | response to stress | cell cycle | cell communication | signal transduction | cell-cell signaling | multicellular organism development | circadian rhythm | biological_process | metabolic process | catabolic process | biosynthetic process | response to light stimulus | response to external stimulus | tropism | response to biotic stimulus | response to abiotic stimulus | response to endogenous stimulus | embryo development | post-embryonic development | fruit ripening | abscission | pollination | flower development | cellular process | programmed cell death | photosynthesis | cellular component organization | cell growth | protein metabolic process | cellular homeostasis | secondary metabolic process | reproductive process | cell differentiation | protein modification process | growth | epigenetic regulation of gene expression | response to chemical | anatomical structure development | regulation of molecular function | other biological process | all cellular component | cellular_component | extracellular region | cell wall | intracellular anatomical structure | nucleus | nuclear envelope | nucleoplasm | nucleolus | cytoplasm | mitochondrion | lysosome | endosome | vacuole | peroxisome | endoplasmic reticulum | golgi apparatus | cytosol | ribosome | cytoskeleton | plasma membrane | chloroplast | plastid | thylakoid | membrane | external encapsulating structure | other cellular component | |||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Aspect | Term | |
---|---|---|
Cellular Component | cytoplasm | |
Cellular Component | nucleoplasm | |
Molecular Function | calmodulin binding | |
Molecular Function | DNA binding | |
Molecular Function | metal ion binding | |
Molecular Function | mRNA binding | |
Molecular Function | N6-methyladenosine-containing RNA reader activity | |
Molecular Function | RNA endonuclease activity | |
Biological Process | mRNA 3'-end processing | |
Biological Process | mRNA splicing, via spliceosome | |
Biological Process | positive regulation of plant-type hypersensitive response | |
Biological Process | regulation of mRNA splicing, via spliceosome | |
Biological Process | regulation of salicylic acid mediated signaling pathway | |
Biological Process | response to oxidative stress |
Keywords
- Molecular function
- Ligand
Names & Taxonomy
Protein names
- Recommended nameZinc finger (CCCH-type) family protein
Gene names
Organism names
- Strain
- Taxonomic lineageEukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > eudicotyledons > Gunneridae > Pentapetalae > rosids > malvids > Brassicales > Brassicaceae > Camelineae > Arabidopsis
Accessions
- Primary accessionD7KEU5
Proteomes
Genome annotation databases
Subcellular Location
UniProt Annotation
GO Annotation
Interaction
Protein-protein interaction databases
Structure
Family & Domains
Features
Showing features for region, domain, zinc finger, compositional bias.
Type | ID | Position(s) | Description | ||
---|---|---|---|---|---|
Region | 1-38 | Disordered | |||
Domain | 60-87 | C3H1-type | |||
Zinc finger | 60-87 | C3H1-type | |||
Domain | 114-141 | C3H1-type | |||
Zinc finger | 114-141 | C3H1-type | |||
Region | 181-233 | Disordered | |||
Domain | 237-372 | YTH | |||
Region | 392-448 | Disordered | |||
Compositional bias | 412-432 | Acidic residues | |||
Region | 541-631 | Disordered | |||
Compositional bias | 585-600 | Polar residues | |||
Keywords
- Domain
Phylogenomic databases
Family and domain databases
Sequence
- Sequence statusComplete
- Length631
- Mass (Da)70,024
- Last updated2010-08-10 v1
- ChecksumB59431D9043F1A68
Features
Showing features for compositional bias.
Type | ID | Position(s) | Description | ||
---|---|---|---|---|---|
Compositional bias | 412-432 | Acidic residues | |||
Compositional bias | 585-600 | Polar residues | |||
Keywords
- Technical term
Sequence databases
Nucleotide Sequence | Protein Sequence | Molecule Type | Status | |
---|---|---|---|---|
GL348713 EMBL· GenBank· DDBJ | EFH69877.1 EMBL· GenBank· DDBJ | Genomic DNA |