D3YVU4 · D3YVU4_MOUSE
- Protein[histone H3]-dimethyl-L-lysine(36) demethylase
- GeneKdm2b
- StatusUniProtKB unreviewed (TrEMBL)
- Organism
- Amino acids1266 (go to sequence)
- Protein existenceEvidence at protein level
- Annotation score2/5
Function
Catalytic activity
- N6,N6-dimethyl-L-lysyl36-[histone H3] + 2 2-oxoglutarate + 2 O2 = L-lysyl36-[histone H3] + 2 formaldehyde + 2 succinate + 2 CO2
RHEA-COMP:9787 CHEBI:61976 Position: 36+ 2 CHEBI:16810 + 2 CHEBI:15379 = RHEA-COMP:9785 CHEBI:29969 Position: 36+ 2 CHEBI:16842 + 2 CHEBI:30031 + 2 CHEBI:16526
GO annotations
all annotations | all molecular function | virus receptor activity | dna binding | rna binding | cytoskeletal motor activity | catalytic activity | gtpase activity | structural molecule activity | transporter activity | cytoskeletal protein binding | lipid binding | cyclase activity | antioxidant activity | oxidoreductase activity | transferase activity | hydrolase activity | lyase activity | isomerase activity | ligase activity | protein tag activity | cargo receptor activity | histone binding | protein folding chaperone | translation regulator activity | nutrient reservoir activity | receptor ligand activity | molecular transducer activity | molecular adaptor activity | toxin activity | cell adhesion mediator activity | molecular function regulator activity | virus coreceptor activity | catalytic activity, acting on a protein | catalytic activity, acting on dna | catalytic activity, acting on rna | molecular carrier activity | transcription regulator activity | general transcription initiation factor activity | molecular sensor activity | molecular sequestering activity | atp-dependent activity | other molecular function | all biological process | mitotic cell cycle | cytokinesis | cytoplasmic translation | immune system process | muscle system process | circulatory system process | renal system process | respiratory system process | carbohydrate metabolic process | generation of precursor metabolites and energy | dna replication | dna repair | dna recombination | chromatin organization | dna-templated transcription | regulation of dna-templated transcription | trna metabolic process | protein folding | protein glycosylation | amino acid metabolic process | modified amino acid metabolic process | lipid metabolic process | vitamin metabolic process | sulfur compound metabolic process | intracellular protein transport | nucleocytoplasmic transport | autophagy | inflammatory response | mitochondrion organization | cytoskeleton organization | microtubule-based movement | peroxisome organization | lysosome organization | chromosome segregation | cell adhesion | establishment or maintenance of cell polarity | programmed cell death | photosynthesis | mrna metabolic process | snrna metabolic process | vesicle-mediated transport | reproductive process | digestive system process | signaling | cell differentiation | protein catabolic process | extracellular matrix organization | regulatory ncrna-mediated gene silencing | telomere organization | cell junction organization | wound healing | ribosome biogenesis | cilium organization | anatomical structure development | cell motility | nervous system process | endocrine process | protein maturation | transmembrane transport | nucleobase-containing small molecule metabolic process | hepaticobiliary system process | membrane organization | protein-containing complex assembly | cell wall organization or biogenesis | nitrogen cycle metabolic process | protein localization to plasma membrane | defense response to other organism | detoxification | meiotic nuclear division | mitotic nuclear division | mitochondrial gene expression | carbohydrate derivative metabolic process | other biological process | all cellular component | nuclear chromosome | extracellular region | extracellular space | cell wall | nucleus | nuclear envelope | nucleoplasm | chromosome | nucleolus | mitochondrion | lysosome | endosome | vacuole | peroxisome | endoplasmic reticulum | golgi apparatus | lipid droplet | microtubule organizing center | cytosol | ribosome | cytoskeleton | plasma membrane | cilium | plastid | thylakoid | external encapsulating structure | extracellular matrix | cytoplasmic vesicle | organelle | other cellular component | |||
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Aspect | Term | |
---|---|---|
Cellular Component | nucleus | |
Molecular Function | DNA binding | |
Molecular Function | histone H3K36me/H3K36me2 demethylase activity | |
Molecular Function | zinc ion binding |
Keywords
- Molecular function
- Biological process
- Ligand
Enzyme and pathway databases
Names & Taxonomy
Protein names
- Recommended name[histone H3]-dimethyl-L-lysine(36) demethylase
- EC number
Gene names
Organism names
- Organism
- Strain
- Taxonomic lineageEukaryota > Metazoa > Chordata > Craniata > Vertebrata > Euteleostomi > Mammalia > Eutheria > Euarchontoglires > Glires > Rodentia > Myomorpha > Muroidea > Muridae > Murinae > Mus > Mus
Accessions
- Primary accessionD3YVU4
Proteomes
Organism-specific databases
Subcellular Location
PTM/Processing
Proteomic databases
Expression
Gene expression databases
Structure
Family & Domains
Features
Showing features for domain, compositional bias, region.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Domain | 147-315 | JmjC | ||||
Sequence: FSHTKLEHLVKRPTVVDLVDWVDNMWPQHLKEKQTEATNALAEMKYPKVKKYCLMSVKGCFTDFHIDFGGTSVWYHVFRGGKIFWLIPPTLHNLALYEEWVLSGKQSDIFLGDRVERCQRIELKQGYTFFIPSGWIHAVYTPVDSLVFGGNILHSFNVPMQLRIYEIED | ||||||
Compositional bias | 378-402 | Acidic residues | ||||
Sequence: DMEEESCEQQPQEEEEEEEDKEEEG | ||||||
Region | 378-476 | Disordered | ||||
Sequence: DMEEESCEQQPQEEEEEEEDKEEEGDGADKTPKPPTDDPTSPTSTPPEDQDSTGKKPKAPAIRFLKRTLSNESEESVKSTSMPTDDPKTPTGSPATEVS | ||||||
Compositional bias | 451-476 | Polar residues | ||||
Sequence: EESVKSTSMPTDDPKTPTGSPATEVS | ||||||
Domain | 579-625 | CXXC-type | ||||
Sequence: ARRRRTRCRKCEACLRTECGECHFCKDMKKFGGPGRMKQSCIMRQCI | ||||||
Domain | 632-698 | PHD-type | ||||
Sequence: TAVCLVCGEAGKEDTVEEEEGKFNLMLMECSICNEIIHPGCLKIKESEGVVNDELPNCWECPKCNHA | ||||||
Region | 700-967 | Disordered | ||||
Sequence: KTGKQKRGPGFKYASNLPGSLLKEQKMNRDNKEGQEPAKRRSECEEAPRRRSDEHPKKVPADGILRRKSDDVHLRRKRKYEKPQELSGRKRLKPGKEDKLFRKKRRSWKNAEDRLSLANKPLRRFKQEPEDDLPEAPPKTRESDQSRSSSPTAGPSTEGAEGPEEKKKVKMRRKRRLVNKELSKELSKELNHEIQKTESTLAHESQQPIKSEPESENDEPKRPLSHCERPHRFSKGLNGTPRELRHSLGPGLRSPPRVMSRPPPSASP | ||||||
Compositional bias | 724-794 | Basic and acidic residues | ||||
Sequence: QKMNRDNKEGQEPAKRRSECEEAPRRRSDEHPKKVPADGILRRKSDDVHLRRKRKYEKPQELSGRKRLKPG | ||||||
Compositional bias | 803-841 | Basic and acidic residues | ||||
Sequence: KRRSWKNAEDRLSLANKPLRRFKQEPEDDLPEAPPKTRE | ||||||
Compositional bias | 877-898 | Basic and acidic residues | ||||
Sequence: VNKELSKELSKELNHEIQKTES | ||||||
Compositional bias | 908-938 | Basic and acidic residues | ||||
Sequence: IKSEPESENDEPKRPLSHCERPHRFSKGLNG |
Sequence similarities
Belongs to the JHDM1 histone demethylase family.
Keywords
- Domain
Phylogenomic databases
Family and domain databases
Sequence
- Sequence statusComplete
- Length1,266
- Mass (Da)144,853
- Last updated2015-07-22 v2
- Checksum57142790E44B4650
Computationally mapped potential isoform sequences
There are 7 potential isoforms mapped to this entry
Features
Showing features for compositional bias.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Compositional bias | 378-402 | Acidic residues | ||||
Sequence: DMEEESCEQQPQEEEEEEEDKEEEG | ||||||
Compositional bias | 451-476 | Polar residues | ||||
Sequence: EESVKSTSMPTDDPKTPTGSPATEVS | ||||||
Compositional bias | 724-794 | Basic and acidic residues | ||||
Sequence: QKMNRDNKEGQEPAKRRSECEEAPRRRSDEHPKKVPADGILRRKSDDVHLRRKRKYEKPQELSGRKRLKPG | ||||||
Compositional bias | 803-841 | Basic and acidic residues | ||||
Sequence: KRRSWKNAEDRLSLANKPLRRFKQEPEDDLPEAPPKTRE | ||||||
Compositional bias | 877-898 | Basic and acidic residues | ||||
Sequence: VNKELSKELSKELNHEIQKTES | ||||||
Compositional bias | 908-938 | Basic and acidic residues | ||||
Sequence: IKSEPESENDEPKRPLSHCERPHRFSKGLNG |
Keywords
- Technical term