D3CZS5 · D3CZS5_9ACTN

  • Protein
    Protein translocase subunit SecD
  • Gene
    secD
  • Status
    UniProtKB unreviewed (TrEMBL)
  • Amino acids
  • Protein existence
    Inferred from homology
  • Annotation score
    3/5

Function

function

Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.

Caution

Lacks conserved residue(s) required for the propagation of feature annotation.
The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.

GO annotations

all annotationsall molecular functionvirus receptor activitydna bindingrna bindingcytoskeletal motor activitycatalytic activitygtpase activitystructural molecule activitytransporter activitycytoskeletal protein bindinglipid bindingcyclase activityantioxidant activityoxidoreductase activitytransferase activityhydrolase activitylyase activityisomerase activityligase activityprotein tag activitycargo receptor activityhistone bindingprotein folding chaperonetranslation regulator activitynutrient reservoir activityreceptor ligand activitymolecular transducer activitymolecular adaptor activitytoxin activitycell adhesion mediator activitymolecular function regulator activityvirus coreceptor activitycatalytic activity, acting on a proteincatalytic activity, acting on dnacatalytic activity, acting on rnamolecular carrier activitytranscription regulator activitygeneral transcription initiation factor activitymolecular sensor activitymolecular sequestering activityatp-dependent activityother molecular functionall biological processmitotic cell cyclecytokinesiscytoplasmic translationimmune system processmuscle system processcirculatory system processrenal system processrespiratory system processcarbohydrate metabolic processgeneration of precursor metabolites and energydna replicationdna repairdna recombinationchromatin organizationdna-templated transcriptionregulation of dna-templated transcriptiontrna metabolic processprotein foldingprotein glycosylationamino acid metabolic processmodified amino acid metabolic processlipid metabolic processvitamin metabolic processsulfur compound metabolic processintracellular protein transportnucleocytoplasmic transportautophagyinflammatory responsemitochondrion organizationcytoskeleton organizationmicrotubule-based movementperoxisome organizationlysosome organizationchromosome segregationcell adhesionestablishment or maintenance of cell polarityprogrammed cell deathphotosynthesismrna metabolic processsnrna metabolic processvesicle-mediated transportreproductive processdigestive system processsignalingcell differentiationprotein catabolic processextracellular matrix organizationregulatory ncrna-mediated gene silencingtelomere organizationcell junction organizationwound healingribosome biogenesiscilium organizationanatomical structure developmentcell motilitynervous system processendocrine processprotein maturationtransmembrane transportnucleobase-containing small molecule metabolic processhepaticobiliary system processmembrane organizationprotein-containing complex assemblycell wall organization or biogenesisnitrogen cycle metabolic processprotein localization to plasma membranedefense response to other organismdetoxificationmeiotic nuclear divisionmitotic nuclear divisionmitochondrial gene expressioncarbohydrate derivative metabolic processother biological processall cellular componentnuclear chromosomeextracellular regionextracellular spacecell wallnucleusnuclear envelopenucleoplasmchromosomenucleolusmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuslipid dropletmicrotubule organizing centercytosolribosomecytoskeletonplasma membraneciliumplastidthylakoidexternal encapsulating structureextracellular matrixcytoplasmic vesicleorganelleother cellular component
Cell color indicative of number of GO terms
AspectTerm
Cellular Componentplasma membrane
Molecular Functionprotein-transporting ATPase activity
Biological Processintracellular protein transmembrane transport
Biological Processprotein targeting
Biological Processprotein transport by the Sec complex

Keywords

Names & Taxonomy

Protein names

  • Recommended name
    Protein translocase subunit SecD

Gene names

    • Name
      secD
    • ORF names
      FrEUN1fDRAFT_3046

Organism names

  • Taxonomic identifier
  • Organism
  • Strain
    • EUN1f
  • Taxonomic lineage
    Bacteria > Actinomycetota > Actinomycetes > Frankiales > Frankiaceae > Parafrankia

Accessions

  • Primary accession
    D3CZS5

Proteomes

Subcellular Location

Cell membrane
; Multi-pass membrane protein
Membrane
; Multi-pass membrane protein

Features

Showing features for transmembrane.

TypeIDPosition(s)Description
Transmembrane457-477Helical
Transmembrane482-501Helical
Transmembrane507-535Helical
Transmembrane564-581Helical
Transmembrane587-607Helical

Keywords

Interaction

Subunit

Forms a complex with SecF. Part of the essential Sec protein translocation apparatus which comprises SecA, SecYEG and auxiliary proteins SecDF. Other proteins may also be involved.

Family & Domains

Features

Showing features for domain, region, compositional bias.

TypeIDPosition(s)Description
Domain70-125Protein translocase subunit SecDF P1
Region127-192Disordered
Compositional bias128-160Polar residues
Region255-289Disordered
Domain327-437SecDF P1 head subdomain
Domain440-614Protein export membrane protein SecD/SecF C-terminal
Region631-712Disordered
Compositional bias687-701Polar residues

Sequence similarities

Belongs to the SecD/SecF family. SecD subfamily.

Keywords

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    712
  • Mass (Da)
    70,825
  • Last updated
    2010-03-23 v1
  • Checksum
    DF429E574AE47F63
MARRSARASGGISVGARLGALGALLAILFGLMAVTGTWTPKLGLDLQGGTSVILTPRSVTGGSIDDSALNKAVDVIRSRVDGLGVAEAEVRRTGGTIEISVPGRGRNDVVALVGQTAELRFREVAGSAAAQSTATPTPSATGSPSATTAPSATPSTGAAANPTPAAAPATGSPAPAATSAPATQKPAALGLPGADSGSGLTLQPAAYIAPAGAGGARIQLAAATNATSLAASTLAAATTSSPAAAASPAASAATGQPSAAATTPAAPAASASPSADQAASGTSADATTPPADVQEKFANLTCTASGVRGSAVSLDRPEDWTAACDRDGTTKYLLKPAALVGTDVKSASAGLLSGGGTTSVTTGQWVVNVDFTGNGQKKFTALTEKTVGSQVAIVLDGVVQSAPQTNERISGSAQISGDFSQSEAQDLADVLRFGALPLAFERSQAESVSPTLGRESLHGGLLAGAIGLGLVVIYSFLYYRALGVVVITSLAVSAALNYAAVTLLGDAIGFTLTLAGIAGLIVSIGVTADSFVVYFERIKDEVRAGRSVRTSVDRAWPAARRTMLSADTVSFLAAAVLYILSVGSVRGFAFTLGLSTLVDVLIMFIFTRPLVTALVRRPLFSTSRYSGLTVRSVGGASQPRSPRLSKRTPGPGRPAAAGAGAGDDVDPGSLDGDGDQADDGGSGPPNQAPRLTKSGPARQGTGRRTAGQRREH

Features

Showing features for compositional bias.

TypeIDPosition(s)Description
Compositional bias128-160Polar residues
Compositional bias687-701Polar residues

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
ADGX01000042
EMBL· GenBank· DDBJ
EFC83784.1
EMBL· GenBank· DDBJ
Genomic DNA

Similar Proteins

Disclaimer

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