D1MN89 · D1MN89_PHYPA
- ProteinPentatricopeptide repeat protein
- GenePpPPR_38
- StatusUniProtKB unreviewed (TrEMBL)
- Amino acids531 (go to sequence)
- Protein existenceEvidence at transcript level
- Annotation score1/5
Function
GO annotations
all annotations | all molecular function | nucleotide binding | molecular_function | nucleic acid binding | dna binding | chromatin binding | dna-binding transcription factor activity | rna binding | cytoskeletal motor activity | catalytic activity | nuclease activity | signaling receptor binding | structural molecule activity | transporter activity | binding | protein binding | translation factor activity, rna binding | lipid binding | kinase activity | transferase activity | hydrolase activity | oxygen binding | enzyme regulator activity | carbohydrate binding | signaling receptor activity | translation regulator activity | transcription regulator activity | other molecular function | all biological process | carbohydrate metabolic process | generation of precursor metabolites and energy | nucleobase-containing compound metabolic process | dna metabolic process | translation | lipid metabolic process | transport | response to stress | cell cycle | cell communication | signal transduction | cell-cell signaling | multicellular organism development | circadian rhythm | biological_process | metabolic process | catabolic process | biosynthetic process | response to light stimulus | response to external stimulus | tropism | response to biotic stimulus | response to abiotic stimulus | response to endogenous stimulus | embryo development | post-embryonic development | fruit ripening | abscission | pollination | flower development | cellular process | programmed cell death | photosynthesis | cellular component organization | cell growth | protein metabolic process | cellular homeostasis | secondary metabolic process | reproductive process | cell differentiation | protein modification process | growth | epigenetic regulation of gene expression | response to chemical | anatomical structure development | regulation of molecular function | other biological process | all cellular component | cellular_component | extracellular region | cell wall | intracellular anatomical structure | nucleus | nuclear envelope | nucleoplasm | nucleolus | cytoplasm | mitochondrion | lysosome | endosome | vacuole | peroxisome | endoplasmic reticulum | golgi apparatus | cytosol | ribosome | cytoskeleton | plasma membrane | chloroplast | plastid | thylakoid | membrane | external encapsulating structure | other cellular component | |||
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Aspect | Term | |
---|---|---|
Molecular Function | mRNA binding |
Names & Taxonomy
Protein names
- Submitted names
Gene names
Organism names
- Strain
- Taxonomic lineageEukaryota > Viridiplantae > Streptophyta > Embryophyta > Bryophyta > Bryophytina > Bryopsida > Funariidae > Funariales > Funariaceae > Physcomitrium
Accessions
- Primary accessionD1MN89
Proteomes
Genome annotation databases
PTM/Processing
Proteomic databases
Interaction
Protein-protein interaction databases
Structure
Family & Domains
Features
Showing features for repeat, domain.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Repeat | 144-178 | PPR | ||||
Sequence: SVKDYNSALLNCVKDGRMRDAMTIFKRFEGAGLKP | ||||||
Repeat | 179-213 | PPR | ||||
Sequence: DVVSYTALIQGFGKLKSYNKVTDVFSRMQRNRCPP | ||||||
Repeat | 249-283 | PPR | ||||
Sequence: DAIAYTALVHAYAQEGLWEEAEKTLSDMLDVGIVD | ||||||
Domain | 306-423 | PROP1-like PPR | ||||
Sequence: ILETMKASGVEASTTLYNTLINIHSKAEAPEKARAVLQLMQADGCQCDEITYTSVMEAYSRNKQPLMAESMMGEMKRAGIQPGPVSYGVLISAYCRAGRLGDAERILRAMQNAKCKPT | ||||||
Repeat | 318-352 | PPR | ||||
Sequence: STTLYNTLINIHSKAEAPEKARAVLQLMQADGCQC | ||||||
Repeat | 353-387 | PPR | ||||
Sequence: DEITYTSVMEAYSRNKQPLMAESMMGEMKRAGIQP | ||||||
Repeat | 388-422 | PPR | ||||
Sequence: GPVSYGVLISAYCRAGRLGDAERILRAMQNAKCKP | ||||||
Repeat | 423-457 | PPR | ||||
Sequence: TVEIYNMMISGYASAKMRSQAERMFQTMQDCGLRP | ||||||
Repeat | 458-492 | PPR | ||||
Sequence: DAVTFNTLISMYIKSRKRKQAEDCYIRMQQLGCKP | ||||||
Repeat | 493-527 | PPR | ||||
Sequence: NAVTYKILLKAYTDYNNSIDAERIRLDMRKAGISL |
Sequence similarities
Belongs to the PPR family. P subfamily.
Keywords
- Domain
Phylogenomic databases
Family and domain databases
Sequence
- Sequence statusComplete
- Length531
- Mass (Da)58,027
- Last updated2010-01-19 v1
- Checksum9EC8FFE78D97CDC7
Keywords
- Technical term
Sequence databases
Nucleotide Sequence | Protein Sequence | Molecule Type | Status | |
---|---|---|---|---|
AB267806 EMBL· GenBank· DDBJ | BAF02664.1 EMBL· GenBank· DDBJ | Genomic DNA | ||
AB267854 EMBL· GenBank· DDBJ | BAF02672.1 EMBL· GenBank· DDBJ | mRNA | ||
ABEU02000006 EMBL· GenBank· DDBJ | PNR53164.1 EMBL· GenBank· DDBJ | Genomic DNA |