D0MRD5 · D0MRD5_PHYIT

Function

function

Probable methyltransferase involved in the maturation of rRNA and in the biogenesis of ribosomal subunits.

Catalytic activity

Features

Showing features for binding site, active site.

1881100200300400500600700800
TypeIDPosition(s)Description
Binding site53S-adenosyl-L-methionine (UniProtKB | ChEBI)
Binding site55S-adenosyl-L-methionine (UniProtKB | ChEBI)
Binding site73S-adenosyl-L-methionine (UniProtKB | ChEBI)
Binding site89S-adenosyl-L-methionine (UniProtKB | ChEBI)
Binding site114S-adenosyl-L-methionine (UniProtKB | ChEBI)
Active site154Proton acceptor

GO annotations

all annotationsall molecular functionvirus receptor activitydna bindingrna bindingcytoskeletal motor activitycatalytic activitygtpase activitystructural molecule activitytransporter activitycytoskeletal protein bindinglipid bindingcyclase activityantioxidant activityoxidoreductase activitytransferase activityhydrolase activitylyase activityisomerase activityligase activityprotein tag activitycargo receptor activityhistone bindingprotein folding chaperonetranslation regulator activitynutrient reservoir activityreceptor ligand activitymolecular transducer activitymolecular adaptor activitytoxin activitycell adhesion mediator activitymolecular function regulator activityvirus coreceptor activitycatalytic activity, acting on a proteincatalytic activity, acting on dnacatalytic activity, acting on rnamolecular carrier activitytranscription regulator activitygeneral transcription initiation factor activitymolecular sensor activitymolecular sequestering activityatp-dependent activityother molecular functionall biological processmitotic cell cyclecytokinesiscytoplasmic translationimmune system processmuscle system processcirculatory system processrenal system processrespiratory system processcarbohydrate metabolic processgeneration of precursor metabolites and energydna replicationdna repairdna recombinationchromatin organizationdna-templated transcriptionregulation of dna-templated transcriptiontrna metabolic processprotein foldingprotein glycosylationamino acid metabolic processmodified amino acid metabolic processlipid metabolic processvitamin metabolic processsulfur compound metabolic processintracellular protein transportnucleocytoplasmic transportautophagyinflammatory responsemitochondrion organizationcytoskeleton organizationmicrotubule-based movementperoxisome organizationlysosome organizationchromosome segregationcell adhesionestablishment or maintenance of cell polarityprogrammed cell deathphotosynthesismrna metabolic processsnrna metabolic processvesicle-mediated transportreproductive processdigestive system processsignalingcell differentiationprotein catabolic processextracellular matrix organizationregulatory ncrna-mediated gene silencingtelomere organizationcell junction organizationwound healingribosome biogenesiscilium organizationanatomical structure developmentcell motilitynervous system processendocrine processprotein maturationtransmembrane transportnucleobase-containing small molecule metabolic processhepaticobiliary system processmembrane organizationprotein-containing complex assemblycell wall organization or biogenesisnitrogen cycle metabolic processprotein localization to plasma membranedefense response to other organismdetoxificationmeiotic nuclear divisionmitotic nuclear divisionmitochondrial gene expressioncarbohydrate derivative metabolic processother biological processall cellular componentnuclear chromosomeextracellular regionextracellular spacecell wallnucleusnuclear envelopenucleoplasmchromosomenucleolusmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuslipid dropletmicrotubule organizing centercytosolribosomecytoskeletonplasma membraneciliumplastidthylakoidexternal encapsulating structureextracellular matrixcytoplasmic vesicleorganelleother cellular component
Cell color indicative of number of GO terms
AspectTerm
Cellular Componentnucleolus
Molecular FunctionrRNA methyltransferase activity

Keywords

Enzyme and pathway databases

Names & Taxonomy

Protein names

  • Recommended name
    Putative rRNA methyltransferase
  • EC number
  • Alternative names
    • 2'-O-ribose RNA methyltransferase SPB1 homolog

Gene names

    • ORF names
      PITG_00663

Organism names

Accessions

  • Primary accession
    D0MRD5

Proteomes

    • Identifier
    • Component
      Partially assembled WGS sequence

Organism-specific databases

Subcellular Location

Keywords

  • Cellular component

Interaction

Protein-protein interaction databases

Family & Domains

Features

Showing features for domain, region, coiled coil, compositional bias.

TypeIDPosition(s)Description
Domain21-197Ribosomal RNA methyltransferase FtsJ
Domain234-390DUF3381
Region329-355Disordered
Coiled coil359-390
Region421-458Disordered
Compositional bias436-458Acidic residues
Region510-542Disordered
Compositional bias564-613Basic and acidic residues
Region564-645Disordered
Domain661-873Ribosomal RNA methyltransferase SPB1-like C-terminal
Region672-696Disordered
Compositional bias680-696Basic and acidic residues
Region837-881Disordered
Compositional bias844-871Basic and acidic residues

Sequence similarities

Keywords

Phylogenomic databases

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    881
  • Mass (Da)
    100,738
  • Last updated
    2009-12-15 v1
  • Checksum
    60D19569EB0A88E7
MVKRKKHDKDKYYNLARQQGYRARSAFKLIQLNKKYDFLSTAKVCIDLCAAPGGWCQVAAKYMPASSIILGIDLLPIRPIRGVKTFQCDITTVRCRQIIKQEMQSWQADVVLCDGAPNVGTEYSKDAYVQNELALIALKLAVDVMGRGGTFVSKVFRSQDYNALLWVFKQLFKKVSATKPLSSRNESAEIFVVCEQFLAPHSIDPKLFDPKYVFDQVDSQEKTITIFHPKFGDRKRHREGYDEALGVTLTNECSVTQFIDAHDPIRLLTDTTRVKFLPEDDVYRDHKDTSIEIVTCLSDLKVLGKSDFKSLLKWRTRMLKYKEELLKAKKPEEEKEEEEKPEKEPERELTEKEKDALVREELSQLRANVQAKKKREKKKERERKQKLRIRAALGMNADGIDVTEAESAFSLKELKLSKSKVDELENAGADSSSDEELQFETSDEEDEDAGLEDSDAEYDELLEASMEKAYEQFLTRRGDDVKTRKAVKRTKVAKRALAGEALVQDSEMFDGDMKQYQKMINPDESSDESDDDEDDLNVSLKVPEKSSAAVNRWFSDNKLFDGIDDKEELSLPEMPKTDKEIRHTKRKAAIERKERREKKKLKKEEKEYELEFGTEFDVAAPANSDDEAAMAAEAQEESDDEATAEKKALIRSGMGAALKTDKDSDKFEVVAAGEEPDENALPIMDDRKYDSDHEEYDAEDRAKTLALASMMIHKSKAKDMIDASYNRYAWNDSEALPDWFADDEDKHYRPQIPIPKNVLAQMKERFMEMATKPVKKVAEARGRKQRMQLKKLKAAKKKATDIANLPDMSTREKLKAIDRAMKGARLKKESKVYVVSNRGGSRTADGKKIGKGKKVKIVDPRMKSDKRNAEIRAKRGKKRKR

Features

Showing features for compositional bias.

TypeIDPosition(s)Description
Compositional bias436-458Acidic residues
Compositional bias564-613Basic and acidic residues
Compositional bias680-696Basic and acidic residues
Compositional bias844-871Basic and acidic residues

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
DS028118
EMBL· GenBank· DDBJ
EEY58054.1
EMBL· GenBank· DDBJ
Genomic DNA

Genome annotation databases

Similar Proteins

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