C7SW01 · C7SW01_9SECO

Function

function

Responsible for viral RNA2 accumulation. May function by recruiting the RNA1-encoded polyprotein that contains the replication protein to RNA2 and enable its replication.
Transports the viral genome to neighboring plant cells directly through plasmosdesmata, without any budding. The movement protein allows efficient cell to cell propagation, by bypassing the host cell wall barrier. Acts by forming a tubular structure at the host plasmodesmata, enlarging it enough to allow free passage of virion capsids. Binds to GTP and to single-stranded RNA and single-stranded DNA in a non-sequence-specific manner.

GO annotations

all annotationsall molecular functionvirus receptor activitydna bindingrna bindingcytoskeletal motor activitycatalytic activitygtpase activitystructural molecule activitytransporter activitycytoskeletal protein bindinglipid bindingcyclase activityantioxidant activityoxidoreductase activitytransferase activityhydrolase activitylyase activityisomerase activityligase activityprotein tag activitycargo receptor activityhistone bindingprotein folding chaperonetranslation regulator activitynutrient reservoir activityreceptor ligand activitymolecular transducer activitymolecular adaptor activitytoxin activitycell adhesion mediator activitymolecular function regulator activityvirus coreceptor activitycatalytic activity, acting on a proteincatalytic activity, acting on dnacatalytic activity, acting on rnamolecular carrier activitytranscription regulator activitygeneral transcription initiation factor activitymolecular sensor activitymolecular sequestering activityatp-dependent activityother molecular functionall biological processmitotic cell cyclecytokinesiscytoplasmic translationimmune system processmuscle system processcirculatory system processrenal system processrespiratory system processcarbohydrate metabolic processgeneration of precursor metabolites and energydna replicationdna repairdna recombinationchromatin organizationdna-templated transcriptionregulation of dna-templated transcriptiontrna metabolic processprotein foldingprotein glycosylationamino acid metabolic processmodified amino acid metabolic processlipid metabolic processvitamin metabolic processsulfur compound metabolic processintracellular protein transportnucleocytoplasmic transportautophagyinflammatory responsemitochondrion organizationcytoskeleton organizationmicrotubule-based movementperoxisome organizationlysosome organizationchromosome segregationcell adhesionestablishment or maintenance of cell polarityprogrammed cell deathphotosynthesismrna metabolic processsnrna metabolic processvesicle-mediated transportreproductive processdigestive system processsignalingcell differentiationprotein catabolic processextracellular matrix organizationregulatory ncrna-mediated gene silencingtelomere organizationcell junction organizationwound healingribosome biogenesiscilium organizationanatomical structure developmentcell motilitynervous system processendocrine processprotein maturationtransmembrane transportnucleobase-containing small molecule metabolic processhepaticobiliary system processmembrane organizationprotein-containing complex assemblycell wall organization or biogenesisnitrogen cycle metabolic processprotein localization to plasma membranedefense response to other organismdetoxificationmeiotic nuclear divisionmitotic nuclear divisionmitochondrial gene expressioncarbohydrate derivative metabolic processother biological processall cellular componentnuclear chromosomeextracellular regionextracellular spacecell wallnucleusnuclear envelopenucleoplasmchromosomenucleolusmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuslipid dropletmicrotubule organizing centercytosolribosomecytoskeletonplasma membraneciliumplastidthylakoidexternal encapsulating structureextracellular matrixcytoplasmic vesicleorganelleother cellular component
Cell color indicative of number of GO terms
AspectTerm
Cellular Componenthost cell plasmodesma
Cellular Componentmembrane
Cellular ComponentT=3 icosahedral viral capsid
Molecular FunctionDNA binding
Molecular FunctionGTP binding
Molecular FunctionRNA binding
Molecular Functionstructural molecule activity
Biological Processsymbiont-mediated suppression of host innate immune response
Biological Processtransport of virus in host, cell to cell
Biological Processvirus-mediated perturbation of host defense response

Keywords

Names & Taxonomy

Protein names

  • Recommended name
    RNA2 polyprotein
  • Alternative names
    • Genome polyprotein M
    • M RNA polyprotein
    • Middle component RNA polyprotein
    • P2

Organism names

  • Taxonomic identifier
  • Organism
  • Strain
    • Toledo
  • Taxonomic lineage
    Viruses > Riboviria > Orthornavirae > Pisuviricota > Pisoniviricetes > Picornavirales > Secoviridae > Comovirinae > Comovirus

Accessions

  • Primary accession
    C7SW01

Proteomes

Subcellular Location

Features

Showing features for transmembrane.

TypeIDPosition(s)Description
Transmembrane37-57Helical

Keywords

Interaction

Subunit

Interacts (via C-terminus) with the large capsid protein.
Interacts with the large capsid protein.

Family & Domains

Features

Showing features for region, compositional bias.

TypeIDPosition(s)Description
Region1045-1095Disordered
Compositional bias1056-1087Basic and acidic residues

Keywords

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    1,095
  • Mass (Da)
    122,063
  • Last updated
    2009-10-13 v1
  • Checksum
    D43F0D71C28ADBB3
MNNIKGRHHCIDNLIPQFAGEPARDFSDKPQEKYVKFLKVSPFSFLCFLIVCHIVTYCETVFKVCFYFNSWTGTKLRDWLLSITRDANVEYKRLEAISSWSAGHQVVIQHSFSAKKMETVMERGIAAKALELRNDSAMNKGKRFVGLKDHIPAGKDLYVHKQKLFEMLKGSKRSREVDISRIKGCEVVEMKHIDVGTLSPGENQIINVKIVKDDMLPQPVQSDYAMVTHSNESKYANAMHVGAIEVIFNSYASPTSDIVGGMILVDTCHKSVANAVRSVFVTGLAGGKLIRVLMYPNTLVEIGPKMNDRFKLVCTTSNSDISEGFNLASVKVNVVGCTQSLMTQYVPQPLLDNLLNKEQGTVVEYLGQLSYVMHHSNHITEEFLANQTMEFDLGKKLQLTPSGSGASLAKSTSMRYVVGPKQRLLNAEEDDGASSFDKRRDAARKIVGMRADATYVDPVFGMTQRAFGQASTTQSLLNKFANTRQMEGTPIETKIARTKIILTKVMAGGNILYTERLSDVLSNVEQRAAIAFQRTHVQHKKLVALATINVPENTGCALMMCYNSGIRGKAVVDAYTASAEASTIWNPACQQQARLEINVNPCKSAWSYQFLRQSKGVFNVVCISGWTTTPSTDLSLTIDWYLSDKDAEPETYCAVGINPKIVLNRWMGKLSFPQGTDVTLRRMPLAIGGGAGGTGLVYMNMPNALCSLWRYMRGGMSFEVIKLSSPYIKATIAFFIAFTDVDATVPNLEAYPHKLVQFSEIQERVTISFDKEDFVMAWSTQVHNSVPLSEDGCPYLYAVVHDSVGSTISGDFNIGVVLKEMNEVESIGRHPGWKGARPLAVSPQGLRKSPSGVWNELFMVRGPPEAKSTDVVQFAIDLVGVGIATKNPGAWSIETNNSPMNNLMRTATWKSGTFHFQVLMEGNPLIKRGDWSSYCEVSLTQSTKVSTMSSRNWVMKDPSSWELEFDIKIEGPNDGFENWESHFSNQTSWFLVFSVFNPDQSTVFVVNGMIDDDCWFAGNTLMPPFLEPGSVSSRHSFLSSVQFDYGTTPSRRAPSSPADNEDDDGRRSERIRQLERYRERDDQNRGNLATYMRRS

Features

Showing features for compositional bias.

TypeIDPosition(s)Description
Compositional bias1056-1087Basic and acidic residues

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
FJ712027
EMBL· GenBank· DDBJ
ACV41392.1
EMBL· GenBank· DDBJ
Genomic RNA

Genome annotation databases

Similar Proteins

Disclaimer

Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. Our staff consists of biologists and biochemists that are not trained to give medical advice.
We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.
FeedbackHelp