C4FR82 · C4FR82_9FIRM

Function

function

Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs.

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.

Catalytic activity

Features

Showing features for active site.

131320406080100120140160180200220240260280300
TypeIDPosition(s)Description
Active site38Nucleophile

GO annotations

all annotationsall molecular functionvirus receptor activitydna bindingrna bindingcytoskeletal motor activitycatalytic activitygtpase activitystructural molecule activitytransporter activitycytoskeletal protein bindinglipid bindingcyclase activityantioxidant activityoxidoreductase activitytransferase activityhydrolase activitylyase activityisomerase activityligase activityprotein tag activitycargo receptor activityhistone bindingprotein folding chaperonetranslation regulator activitynutrient reservoir activityreceptor ligand activitymolecular transducer activitymolecular adaptor activitytoxin activitycell adhesion mediator activitymolecular function regulator activityvirus coreceptor activitycatalytic activity, acting on a proteincatalytic activity, acting on dnacatalytic activity, acting on rnamolecular carrier activitytranscription regulator activitygeneral transcription initiation factor activitymolecular sensor activitymolecular sequestering activityatp-dependent activityother molecular functionall biological processmitotic cell cyclecytokinesiscytoplasmic translationimmune system processmuscle system processcirculatory system processrenal system processrespiratory system processcarbohydrate metabolic processgeneration of precursor metabolites and energydna replicationdna repairdna recombinationchromatin organizationdna-templated transcriptionregulation of dna-templated transcriptiontrna metabolic processprotein foldingprotein glycosylationamino acid metabolic processmodified amino acid metabolic processlipid metabolic processvitamin metabolic processsulfur compound metabolic processintracellular protein transportnucleocytoplasmic transportautophagyinflammatory responsemitochondrion organizationcytoskeleton organizationmicrotubule-based movementperoxisome organizationlysosome organizationchromosome segregationcell adhesionestablishment or maintenance of cell polarityprogrammed cell deathphotosynthesismrna metabolic processsnrna metabolic processvesicle-mediated transportreproductive processdigestive system processsignalingcell differentiationprotein catabolic processextracellular matrix organizationregulatory ncrna-mediated gene silencingtelomere organizationcell junction organizationwound healingribosome biogenesiscilium organizationanatomical structure developmentcell motilitynervous system processendocrine processprotein maturationtransmembrane transportnucleobase-containing small molecule metabolic processhepaticobiliary system processmembrane organizationprotein-containing complex assemblycell wall organization or biogenesisnitrogen cycle metabolic processprotein localization to plasma membranedefense response to other organismdetoxificationmeiotic nuclear divisionmitotic nuclear divisionmitochondrial gene expressioncarbohydrate derivative metabolic processother biological processall cellular componentnuclear chromosomeextracellular regionextracellular spacecell wallnucleusnuclear envelopenucleoplasmchromosomenucleolusmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuslipid dropletmicrotubule organizing centercytosolribosomecytoskeletonplasma membraneciliumplastidthylakoidexternal encapsulating structureextracellular matrixcytoplasmic vesicleorganelleother cellular component
Cell color indicative of number of GO terms
AspectTerm
Molecular FunctionRNA binding
Molecular FunctiontRNA pseudouridine(55) synthase activity
Biological ProcessmRNA pseudouridine synthesis
Biological ProcesstRNA pseudouridine synthesis

Keywords

Enzyme and pathway databases

Names & Taxonomy

Protein names

  • Recommended name
    tRNA pseudouridine synthase B
  • EC number
  • Alternative names
    • tRNA pseudouridine(55) synthase
      (Psi55 synthase
      )
    • tRNA pseudouridylate synthase
    • tRNA-uridine isomerase

Gene names

    • Name
      truB
    • ORF names
      VEIDISOL_01305

Organism names

  • Taxonomic identifier
  • Strain
    • ATCC 17748
  • Taxonomic lineage
    Bacteria > Bacillota > Negativicutes > Veillonellales > Veillonellaceae > Veillonella

Accessions

  • Primary accession
    C4FR82

Proteomes

Family & Domains

Features

Showing features for domain.

TypeIDPosition(s)Description
Domain23-86Pseudouridine synthase II N-terminal
Domain113-193Pseudouridine synthase II N-terminal

Sequence similarities

Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.

Phylogenomic databases

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    313
  • Mass (Da)
    34,960
  • Last updated
    2009-07-07 v1
  • Checksum
    0071174EB02DEA4D
MDGILPFLKPPGITSHDAVAICRRILKEKRIGHSGTLDPMAYGVLPVFLGKATRLIEYTEGFDKTYVAECKFGTFTDTEDSSGQQVLPDKDMVLRDGVLLNEYIQSSELSDAMLKPTFDELVNTLNTFIGVQNQRPSKYSAIKINGIRAYEYARKGIPVELPLRQIHIKHIELIAYGFPYFTVRVTCSGGTYIRSLLRDICVSLGIPGTMTSLARTQVGPFDIDSAKMAEELMLHGESLLLPTDTAVSHLSKVMVNSVQLKMMVQGKELPISSEFSYTEPEHYYRAYGPHGFIGIMKRTNHSLKVEKNIFIEG

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
ACIK02000010
EMBL· GenBank· DDBJ
EEP65425.1
EMBL· GenBank· DDBJ
Genomic DNA

Similar Proteins

Disclaimer

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