C0HM95 · CO1AB_EPICA
- ProteinCollagen, type I, alpha 1b
- StatusUniProtKB reviewed (Swiss-Prot)
- Amino acids1059 (go to sequence)
- Protein existenceEvidence at protein level
- Annotation score2/5
Function
GO annotations
all annotations | all molecular function | virus receptor activity | dna binding | rna binding | cytoskeletal motor activity | catalytic activity | gtpase activity | structural molecule activity | transporter activity | cytoskeletal protein binding | lipid binding | cyclase activity | antioxidant activity | oxidoreductase activity | transferase activity | hydrolase activity | lyase activity | isomerase activity | ligase activity | protein tag activity | cargo receptor activity | histone binding | protein folding chaperone | translation regulator activity | nutrient reservoir activity | receptor ligand activity | molecular transducer activity | molecular adaptor activity | toxin activity | cell adhesion mediator activity | molecular function regulator activity | virus coreceptor activity | catalytic activity, acting on a protein | catalytic activity, acting on dna | catalytic activity, acting on rna | molecular carrier activity | transcription regulator activity | general transcription initiation factor activity | molecular sensor activity | molecular sequestering activity | atp-dependent activity | other molecular function | all biological process | mitotic cell cycle | cytokinesis | cytoplasmic translation | immune system process | muscle system process | circulatory system process | renal system process | respiratory system process | carbohydrate metabolic process | generation of precursor metabolites and energy | dna replication | dna repair | dna recombination | chromatin organization | dna-templated transcription | regulation of dna-templated transcription | trna metabolic process | protein folding | protein glycosylation | amino acid metabolic process | modified amino acid metabolic process | lipid metabolic process | vitamin metabolic process | sulfur compound metabolic process | intracellular protein transport | nucleocytoplasmic transport | autophagy | inflammatory response | mitochondrion organization | cytoskeleton organization | microtubule-based movement | peroxisome organization | lysosome organization | chromosome segregation | cell adhesion | establishment or maintenance of cell polarity | programmed cell death | photosynthesis | mrna metabolic process | snrna metabolic process | vesicle-mediated transport | reproductive process | digestive system process | signaling | cell differentiation | protein catabolic process | extracellular matrix organization | regulatory ncrna-mediated gene silencing | telomere organization | cell junction organization | wound healing | ribosome biogenesis | cilium organization | anatomical structure development | cell motility | nervous system process | endocrine process | protein maturation | transmembrane transport | nucleobase-containing small molecule metabolic process | hepaticobiliary system process | membrane organization | protein-containing complex assembly | cell wall organization or biogenesis | nitrogen cycle metabolic process | protein localization to plasma membrane | defense response to other organism | detoxification | meiotic nuclear division | mitotic nuclear division | mitochondrial gene expression | carbohydrate derivative metabolic process | other biological process | all cellular component | nuclear chromosome | extracellular region | extracellular space | cell wall | nucleus | nuclear envelope | nucleoplasm | chromosome | nucleolus | mitochondrion | lysosome | endosome | vacuole | peroxisome | endoplasmic reticulum | golgi apparatus | lipid droplet | microtubule organizing center | cytosol | ribosome | cytoskeleton | plasma membrane | cilium | plastid | thylakoid | external encapsulating structure | extracellular matrix | cytoplasmic vesicle | organelle | other cellular component | |||
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Aspect | Term | |
---|---|---|
Cellular Component | collagen trimer | |
Cellular Component | collagen-containing extracellular matrix | |
Cellular Component | cytoplasm | |
Cellular Component | extracellular space | |
Molecular Function | extracellular matrix structural constituent conferring tensile strength | |
Biological Process | extracellular matrix organization | |
Biological Process | skeletal system development |
Names & Taxonomy
Protein names
- Recommended nameCollagen, type I, alpha 1b
- Short namescol1a1b
- Alternative names
Organism names
- Taxonomic lineagecellular organisms > Eukaryota (eucaryotes) > Opisthokonta > Metazoa (metazoans) > Eumetazoa > Bilateria > Deuterostomia > Chordata (chordates) > Craniata > Vertebrata (vertebrates) > Gnathostomata (jawed vertebrates) > Teleostomi > Euteleostomi (bony vertebrates) > Actinopterygii (ray-finned fishes) > Actinopteri > Neopterygii > Teleostei (teleost fishes) > Osteoglossocephalai > Clupeocephala > Euteleosteomorpha > Neoteleostei > Eurypterygia > Ctenosquamata > Acanthomorphata > Euacanthomorphacea > Percomorphaceae > Eupercaria > Perciformes (perches and others) > Serranoidei > Serranidae (sea basses) > Epinephelinae > Epinephelini > Epinephelus
Accessions
- Primary accessionC0HM95
Subcellular Location
UniProt Annotation
GO Annotation
Keywords
- Cellular component
PTM/Processing
Features
Showing features for chain.
Type | ID | Position(s) | Description | ||
---|---|---|---|---|---|
Chain | PRO_0000459609 | 1-1059 | Collagen, type I, alpha 1b | ||
Structure
Family & Domains
Features
Showing features for region, compositional bias, domain.
Type | ID | Position(s) | Description | ||
---|---|---|---|---|---|
Region | 1-999 | Disordered | |||
Compositional bias | 880-894 | Basic and acidic residues | |||
Compositional bias | 944-960 | Pro residues | |||
Domain | 1026-1059 | Fibrillar collagen NC1 | |||
Sequence similarities
Belongs to the fibrillar collagen family.
Keywords
- Domain
Family and domain databases
Sequence
- Sequence statusFragments
- Length1,059
- Mass (Da)95,393
- Last updated2024-01-24 v1
- MD5 Checksum5725392B995D255C1EA0EB36F36780D2
Features
Showing features for non-terminal residue, non-adjacent residues, compositional bias.
Type | ID | Position(s) | Description | ||
---|---|---|---|---|---|
Non-terminal residue | 1 | ||||
Non-adjacent residues | 25-26 | ||||
Non-adjacent residues | 71-72 | ||||
Non-adjacent residues | 101-102 | ||||
Non-adjacent residues | 335-336 | ||||
Compositional bias | 880-894 | Basic and acidic residues | |||
Non-adjacent residues | 936-937 | ||||
Compositional bias | 944-960 | Pro residues | |||
Non-adjacent residues | 986-987 | ||||
Non-adjacent residues | 999-1000 | ||||
Non-adjacent residues | 1012-1013 | ||||
Non-adjacent residues | 1031-1032 | ||||
Keywords
- Technical term