C0FMY5 · C0FMY5_9FIRM
- ProteinRibonuclease HII
- GenernhB
- StatusUniProtKB unreviewed (TrEMBL)
- Amino acids253 (go to sequence)
- Protein existenceInferred from homology
- Annotation score3/5
Function
function
Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
Catalytic activity
Cofactor
Protein has several cofactor binding sites:
Mg2+ (UniProtKB | Rhea| CHEBI:18420 )
Note: Manganese or magnesium. Binds 1 divalent metal ion per monomer in the absence of substrate. May bind a second metal ion after substrate binding.
Features
Showing features for binding site.
Type | ID | Position(s) | Description | ||
---|---|---|---|---|---|
Binding site | 77 | a divalent metal cation (UniProtKB | ChEBI) | |||
Binding site | 78 | a divalent metal cation (UniProtKB | ChEBI) | |||
Binding site | 169 | a divalent metal cation (UniProtKB | ChEBI) | |||
GO annotations
Aspect | Term | |
---|---|---|
Cellular Component | cytoplasm | |
Cellular Component | ribonuclease H2 complex | |
Molecular Function | manganese ion binding | |
Molecular Function | RNA binding | |
Molecular Function | RNA-DNA hybrid ribonuclease activity | |
Biological Process | DNA replication, removal of RNA primer | |
Biological Process | mismatch repair |
Keywords
- Molecular function
- Ligand
Enzyme and pathway databases
Names & Taxonomy
Protein names
- Recommended nameRibonuclease HII
- EC number
- Short namesRNase HII
Gene names
Organism names
- Strain
- Taxonomic lineageBacteria > Bacillota > Clostridia > Lachnospirales > Lachnospiraceae > Roseburia
Accessions
- Primary accessionC0FMY5
Proteomes
Subcellular Location
Structure
Sequence
- Sequence statusComplete
- Length253
- Mass (Da)28,046
- Last updated2009-05-05 v1
- Checksum576021D903DB695F
Sequence databases
Nucleotide Sequence | Protein Sequence | Molecule Type | Status | |
---|---|---|---|---|
ACFY01000003 EMBL· GenBank· DDBJ | EEG96050.1 EMBL· GenBank· DDBJ | Genomic DNA |