B0DEY8 · B0DEY8_LACBS
- ProteinDNA-(apurinic or apyrimidinic site) endonuclease 2
- StatusUniProtKB unreviewed (TrEMBL)
- Amino acids650 (go to sequence)
- Protein existenceInferred from homology
- Annotation score2/5
Function
Cofactor
Protein has several cofactor binding sites:
Mn2+ (UniProtKB | Rhea| CHEBI:29035 )
Note: Probably binds two magnesium or manganese ions per subunit.
Features
Showing features for binding site, active site, site.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Binding site | 7 | Mg2+ 1 (UniProtKB | ChEBI) | ||||
Sequence: N | ||||||
Binding site | 42 | Mg2+ 1 (UniProtKB | ChEBI) | ||||
Sequence: E | ||||||
Active site | 154 | |||||
Sequence: Y | ||||||
Active site | 195 | Proton donor/acceptor | ||||
Sequence: D | ||||||
Binding site | 195 | Mg2+ 1 (UniProtKB | ChEBI) | ||||
Sequence: D | ||||||
Binding site | 197 | Mg2+ 1 (UniProtKB | ChEBI) | ||||
Sequence: N | ||||||
Site | 197 | Transition state stabilizer | ||||
Sequence: N | ||||||
Site | 285 | Important for catalytic activity | ||||
Sequence: D | ||||||
Binding site | 310 | Mg2+ 1 (UniProtKB | ChEBI) | ||||
Sequence: D | ||||||
Active site | 311 | Proton acceptor | ||||
Sequence: H | ||||||
Binding site | 311 | Mg2+ 1 (UniProtKB | ChEBI) | ||||
Sequence: H | ||||||
Site | 311 | Interaction with DNA substrate | ||||
Sequence: H |
GO annotations
all annotations | all molecular function | virus receptor activity | dna binding | rna binding | cytoskeletal motor activity | catalytic activity | gtpase activity | structural molecule activity | transporter activity | cytoskeletal protein binding | lipid binding | cyclase activity | antioxidant activity | oxidoreductase activity | transferase activity | hydrolase activity | lyase activity | isomerase activity | ligase activity | protein tag activity | cargo receptor activity | histone binding | protein folding chaperone | translation regulator activity | nutrient reservoir activity | receptor ligand activity | molecular transducer activity | molecular adaptor activity | toxin activity | cell adhesion mediator activity | molecular function regulator activity | virus coreceptor activity | catalytic activity, acting on a protein | catalytic activity, acting on dna | catalytic activity, acting on rna | molecular carrier activity | transcription regulator activity | general transcription initiation factor activity | molecular sensor activity | molecular sequestering activity | atp-dependent activity | other molecular function | all biological process | mitotic cell cycle | cytokinesis | cytoplasmic translation | immune system process | muscle system process | circulatory system process | renal system process | respiratory system process | carbohydrate metabolic process | generation of precursor metabolites and energy | dna replication | dna repair | dna recombination | chromatin organization | dna-templated transcription | regulation of dna-templated transcription | trna metabolic process | protein folding | protein glycosylation | amino acid metabolic process | modified amino acid metabolic process | lipid metabolic process | vitamin metabolic process | sulfur compound metabolic process | intracellular protein transport | nucleocytoplasmic transport | autophagy | inflammatory response | mitochondrion organization | cytoskeleton organization | microtubule-based movement | peroxisome organization | lysosome organization | chromosome segregation | cell adhesion | establishment or maintenance of cell polarity | programmed cell death | photosynthesis | mrna metabolic process | snrna metabolic process | vesicle-mediated transport | reproductive process | digestive system process | signaling | cell differentiation | protein catabolic process | extracellular matrix organization | regulatory ncrna-mediated gene silencing | telomere organization | cell junction organization | wound healing | ribosome biogenesis | cilium organization | anatomical structure development | cell motility | nervous system process | endocrine process | protein maturation | transmembrane transport | nucleobase-containing small molecule metabolic process | hepaticobiliary system process | membrane organization | protein-containing complex assembly | cell wall organization or biogenesis | nitrogen cycle metabolic process | protein localization to plasma membrane | defense response to other organism | detoxification | meiotic nuclear division | mitotic nuclear division | mitochondrial gene expression | carbohydrate derivative metabolic process | other biological process | all cellular component | nuclear chromosome | extracellular region | extracellular space | cell wall | nucleus | nuclear envelope | nucleoplasm | chromosome | nucleolus | mitochondrion | lysosome | endosome | vacuole | peroxisome | endoplasmic reticulum | golgi apparatus | lipid droplet | microtubule organizing center | cytosol | ribosome | cytoskeleton | plasma membrane | cilium | plastid | thylakoid | external encapsulating structure | extracellular matrix | cytoplasmic vesicle | organelle | other cellular component | |||
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Aspect | Term | |
---|---|---|
Cellular Component | nucleus | |
Molecular Function | DNA-(apurinic or apyrimidinic site) endonuclease activity | |
Molecular Function | double-stranded DNA 3'-5' DNA exonuclease activity | |
Molecular Function | phosphoric diester hydrolase activity | |
Molecular Function | zinc ion binding | |
Biological Process | base-excision repair |
Keywords
- Biological process
- Ligand
Names & Taxonomy
Protein names
- Recommended nameDNA-(apurinic or apyrimidinic site) endonuclease 2
Gene names
Organism names
- Strain
- Taxonomic lineageEukaryota > Fungi > Dikarya > Basidiomycota > Agaricomycotina > Agaricomycetes > Agaricomycetidae > Agaricales > Agaricineae > Hydnangiaceae > Laccaria
Accessions
- Primary accessionB0DEY8
Proteomes
Subcellular Location
Interaction
Protein-protein interaction databases
Structure
Family & Domains
Features
Showing features for compositional bias, region, domain.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Compositional bias | 370-384 | Polar residues | ||||
Sequence: GQKSKGSGSSDTPCP | ||||||
Region | 370-558 | Disordered | ||||
Sequence: GQKSKGSGSSDTPCPALVPSPSPIIVDDNNSATITPSSTPIPTTQTSTSGSSTTKSSPVPSSPLQQPSSSQPRPPSSSPPPVPISTKRKLVADIRSTSKKRKQREEEEKKPSQQSIASFFAKPMRKPKDSLPPASSSIKAKGKQRAPEGDVDLEEDYQFALQLSQLNEPLVPSKSQSKNSKSHGGKGTA | ||||||
Compositional bias | 393-433 | Polar residues | ||||
Sequence: IIVDDNNSATITPSSTPIPTTQTSTSGSSTTKSSPVPSSPL | ||||||
Compositional bias | 434-451 | Pro residues | ||||
Sequence: QQPSSSQPRPPSSSPPPV | ||||||
Compositional bias | 461-481 | Basic and acidic residues | ||||
Sequence: ADIRSTSKKRKQREEEEKKPS | ||||||
Compositional bias | 529-556 | Polar residues | ||||
Sequence: ALQLSQLNEPLVPSKSQSKNSKSHGGKG | ||||||
Domain | 572-633 | GRF-type | ||||
Sequence: CIVHGELAKELTVTKQGANKGKRFFICARPVGPGYDKGRGERLREHVDPHWKCDFFKWSSEV |
Sequence similarities
Belongs to the DNA repair enzymes AP/ExoA family.
Keywords
- Domain
Phylogenomic databases
Family and domain databases
Sequence
- Sequence statusComplete
- Length650
- Mass (Da)71,848
- Last updated2008-02-26 v1
- ChecksumC4753079469CB8D6
Features
Showing features for compositional bias.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Compositional bias | 370-384 | Polar residues | ||||
Sequence: GQKSKGSGSSDTPCP | ||||||
Compositional bias | 393-433 | Polar residues | ||||
Sequence: IIVDDNNSATITPSSTPIPTTQTSTSGSSTTKSSPVPSSPL | ||||||
Compositional bias | 434-451 | Pro residues | ||||
Sequence: QQPSSSQPRPPSSSPPPV | ||||||
Compositional bias | 461-481 | Basic and acidic residues | ||||
Sequence: ADIRSTSKKRKQREEEEKKPS | ||||||
Compositional bias | 529-556 | Polar residues | ||||
Sequence: ALQLSQLNEPLVPSKSQSKNSKSHGGKG |
Keywords
- Technical term
Sequence databases
Nucleotide Sequence | Protein Sequence | Molecule Type | Status | |
---|---|---|---|---|
DS547107 EMBL· GenBank· DDBJ | EDR06754.1 EMBL· GenBank· DDBJ | Genomic DNA |