A9JRG6 · A9JRG6_DANRE
- ProteinActin-binding LIM protein 1
- Geneablim1a
- StatusUniProtKB unreviewed (TrEMBL)
- Amino acids693 (go to sequence)
- Protein existenceEvidence at transcript level
- Annotation score2/5
Function
GO annotations
all annotations | all molecular function | virus receptor activity | dna binding | rna binding | cytoskeletal motor activity | catalytic activity | gtpase activity | structural molecule activity | transporter activity | cytoskeletal protein binding | lipid binding | cyclase activity | antioxidant activity | oxidoreductase activity | transferase activity | hydrolase activity | lyase activity | isomerase activity | ligase activity | protein tag activity | cargo receptor activity | histone binding | protein folding chaperone | translation regulator activity | nutrient reservoir activity | receptor ligand activity | molecular transducer activity | molecular adaptor activity | toxin activity | cell adhesion mediator activity | molecular function regulator activity | virus coreceptor activity | catalytic activity, acting on a protein | catalytic activity, acting on dna | catalytic activity, acting on rna | molecular carrier activity | transcription regulator activity | general transcription initiation factor activity | molecular sensor activity | molecular sequestering activity | atp-dependent activity | other molecular function | all biological process | mitotic cell cycle | cytokinesis | cytoplasmic translation | immune system process | muscle system process | circulatory system process | renal system process | respiratory system process | carbohydrate metabolic process | generation of precursor metabolites and energy | dna replication | dna repair | dna recombination | chromatin organization | dna-templated transcription | regulation of dna-templated transcription | trna metabolic process | protein folding | protein glycosylation | amino acid metabolic process | modified amino acid metabolic process | lipid metabolic process | vitamin metabolic process | sulfur compound metabolic process | intracellular protein transport | nucleocytoplasmic transport | autophagy | inflammatory response | mitochondrion organization | cytoskeleton organization | microtubule-based movement | peroxisome organization | lysosome organization | chromosome segregation | cell adhesion | establishment or maintenance of cell polarity | programmed cell death | photosynthesis | mrna metabolic process | snrna metabolic process | vesicle-mediated transport | reproductive process | digestive system process | signaling | cell differentiation | protein catabolic process | extracellular matrix organization | regulatory ncrna-mediated gene silencing | telomere organization | cell junction organization | wound healing | ribosome biogenesis | cilium organization | anatomical structure development | cell motility | nervous system process | endocrine process | protein maturation | transmembrane transport | nucleobase-containing small molecule metabolic process | hepaticobiliary system process | membrane organization | protein-containing complex assembly | cell wall organization or biogenesis | nitrogen cycle metabolic process | protein localization to plasma membrane | defense response to other organism | detoxification | meiotic nuclear division | mitotic nuclear division | mitochondrial gene expression | carbohydrate derivative metabolic process | other biological process | all cellular component | nuclear chromosome | extracellular region | extracellular space | cell wall | nucleus | nuclear envelope | nucleoplasm | chromosome | nucleolus | mitochondrion | lysosome | endosome | vacuole | peroxisome | endoplasmic reticulum | golgi apparatus | lipid droplet | microtubule organizing center | cytosol | ribosome | cytoskeleton | plasma membrane | cilium | plastid | thylakoid | external encapsulating structure | extracellular matrix | cytoplasmic vesicle | organelle | other cellular component | |||
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Aspect | Term | |
---|---|---|
Cellular Component | actin cytoskeleton | |
Cellular Component | cytoplasm | |
Cellular Component | stress fiber | |
Molecular Function | actin filament binding | |
Molecular Function | metal ion binding | |
Biological Process | cilium assembly | |
Biological Process | cytoskeleton organization | |
Biological Process | lamellipodium assembly |
Keywords
- Ligand
Names & Taxonomy
Protein names
- Submitted names
Gene names
Organism names
- Taxonomic lineageEukaryota > Metazoa > Chordata > Craniata > Vertebrata > Euteleostomi > Actinopterygii > Neopterygii > Teleostei > Ostariophysi > Cypriniformes > Danionidae > Danioninae > Danio
Accessions
- Primary accessionA9JRG6
Proteomes
Organism-specific databases
Subcellular Location
PTM/Processing
Keywords
- PTM
Structure
Family & Domains
Features
Showing features for domain, region, compositional bias.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Domain | 48-107 | LIM zinc-binding | ||||
Sequence: IRCAKCGELCKGEVLRVQAKHFHIKCFTCKVCGCDLAQGGFFMKNGEYLCTLDYQRIHGT | ||||||
Domain | 108-167 | LIM zinc-binding | ||||
Sequence: RCNICGEFVEGEVVTALGKTYHPTCFVCTICKRPFPAGDRVTFNGKDCLCQYCAEPMSPG | ||||||
Domain | 185-244 | LIM zinc-binding | ||||
Sequence: KSCAGCGRDIKNGQALLALERQWHLGCFKCKACAKVLTGEYISKDGAPFCERDYQLQFGV | ||||||
Region | 297-331 | Disordered | ||||
Sequence: CKHSPRGEERQRPTRSSSESICSRPGSSIPSSPGH | ||||||
Compositional bias | 312-330 | Polar residues | ||||
Sequence: SSSESICSRPGSSIPSSPG | ||||||
Compositional bias | 375-399 | Basic and acidic residues | ||||
Sequence: LDESEERESVAELQSSRRESSPMPD | ||||||
Region | 375-524 | Disordered | ||||
Sequence: LDESEERESVAELQSSRRESSPMPDDRTRSPTPSAEGYYDMRERILHRSTSQGSIGSPIYSRHNYTPTLSRSPQHFHRPGTEPSSGRSSPGSSTPPLLLTPKHFHLPDQGMNIYRKPPIYKQHDGRRRSKEEDEEEIQKRRQIQEEHLNK | ||||||
Compositional bias | 422-470 | Polar residues | ||||
Sequence: RSTSQGSIGSPIYSRHNYTPTLSRSPQHFHRPGTEPSSGRSSPGSSTPP | ||||||
Compositional bias | 498-521 | Basic and acidic residues | ||||
Sequence: DGRRRSKEEDEEEIQKRRQIQEEH | ||||||
Region | 551-591 | Disordered | ||||
Sequence: LSAQRYEHGSNQSSPSKTGSLPGYGRNGLHRPQSTDFTQYN | ||||||
Compositional bias | 554-571 | Polar residues | ||||
Sequence: QRYEHGSNQSSPSKTGSL | ||||||
Region | 604-623 | Disordered | ||||
Sequence: QPMHDGHRTPTRMDRGVSMP | ||||||
Domain | 625-693 | HP | ||||
Sequence: MLEPKVYPYEMLIITSRSRSKLPRDVDRTRLERHLAPEVFFEIFGMEIQEFNRLPLWKRNELKKKAKLF |
Keywords
- Domain
Phylogenomic databases
Family and domain databases
Sequence
- Sequence statusComplete
- Length693
- Mass (Da)78,828
- Last updated2008-02-05 v1
- ChecksumFD6204F78B83B9AC
Computationally mapped potential isoform sequences
There are 15 potential isoforms mapped to this entry
Entry | Entry name | Gene name | Length | ||
---|---|---|---|---|---|
A0A8M9QJF9 | A0A8M9QJF9_DANRE | ablim1a | 803 | ||
A0A8M3BEV3 | A0A8M3BEV3_DANRE | ablim1a | 777 | ||
A0A8M6Z9H1 | A0A8M6Z9H1_DANRE | ablim1a | 751 | ||
A0A8M9QN76 | A0A8M9QN76_DANRE | ablim1a | 754 | ||
A0A8M6Z923 | A0A8M6Z923_DANRE | ablim1a | 702 | ||
A0A8M9PXI2 | A0A8M9PXI2_DANRE | ablim1a | 797 | ||
A0A8M9PXI8 | A0A8M9PXI8_DANRE | ablim1a | 726 | ||
A0A8M9Q9F1 | A0A8M9Q9F1_DANRE | ablim1a | 794 | ||
A0A8M9Q9F5 | A0A8M9Q9F5_DANRE | ablim1a | 724 | ||
A0A8M3B5I2 | A0A8M3B5I2_DANRE | ablim1a | 779 | ||
A0A8M3B896 | A0A8M3B896_DANRE | ablim1a | 788 | ||
A0A8M6Z1J7 | A0A8M6Z1J7_DANRE | ablim1a | 749 | ||
A0A8M9QF47 | A0A8M9QF47_DANRE | ablim1a | 769 | ||
A0A8M3AZG5 | A0A8M3AZG5_DANRE | ablim1a | 739 | ||
A0A8M9QJG3 | A0A8M9QJG3_DANRE | ablim1a | 752 |
Features
Showing features for compositional bias.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Compositional bias | 312-330 | Polar residues | ||||
Sequence: SSSESICSRPGSSIPSSPG | ||||||
Compositional bias | 375-399 | Basic and acidic residues | ||||
Sequence: LDESEERESVAELQSSRRESSPMPD | ||||||
Compositional bias | 422-470 | Polar residues | ||||
Sequence: RSTSQGSIGSPIYSRHNYTPTLSRSPQHFHRPGTEPSSGRSSPGSSTPP | ||||||
Compositional bias | 498-521 | Basic and acidic residues | ||||
Sequence: DGRRRSKEEDEEEIQKRRQIQEEH | ||||||
Compositional bias | 554-571 | Polar residues | ||||
Sequence: QRYEHGSNQSSPSKTGSL |
Keywords
- Technical term
Sequence databases
Nucleotide Sequence | Protein Sequence | Molecule Type | Status | |
---|---|---|---|---|
BC155652 EMBL· GenBank· DDBJ | AAI55653.1 EMBL· GenBank· DDBJ | mRNA |