A6MVX3 · RPOC1_RHDSA
- ProteinDNA-directed RNA polymerase subunit beta'
- GenerpoC1
- StatusUniProtKB reviewed (Swiss-Prot)
- Amino acids623 (go to sequence)
- Protein existenceInferred from homology
- Annotation score3/5
Function
function
DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
Catalytic activity
- RNA(n) + a ribonucleoside 5'-triphosphate = RNA(n+1) + diphosphate
Cofactor
Protein has several cofactor binding sites:
Note: Binds 1 Mg2+ ion per subunit.
Note: Binds 1 Zn2+ ion per subunit.
Features
Showing features for binding site.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Binding site | 70 | Zn2+ (UniProtKB | ChEBI) | ||||
Sequence: C | ||||||
Binding site | 72 | Zn2+ (UniProtKB | ChEBI) | ||||
Sequence: C | ||||||
Binding site | 85 | Zn2+ (UniProtKB | ChEBI) | ||||
Sequence: C | ||||||
Binding site | 88 | Zn2+ (UniProtKB | ChEBI) | ||||
Sequence: C | ||||||
Binding site | 466 | Mg2+ (UniProtKB | ChEBI) | ||||
Sequence: D | ||||||
Binding site | 468 | Mg2+ (UniProtKB | ChEBI) | ||||
Sequence: D | ||||||
Binding site | 470 | Mg2+ (UniProtKB | ChEBI) | ||||
Sequence: D |
GO annotations
Aspect | Term | |
---|---|---|
Cellular Component | chloroplast | |
Cellular Component | DNA-directed RNA polymerase complex | |
Molecular Function | DNA binding | |
Molecular Function | DNA-directed 5'-3' RNA polymerase activity | |
Molecular Function | magnesium ion binding | |
Molecular Function | zinc ion binding | |
Biological Process | DNA-templated transcription |
Keywords
- Molecular function
- Biological process
- Ligand
Enzyme and pathway databases
Names & Taxonomy
Protein names
- Recommended nameDNA-directed RNA polymerase subunit beta'
- EC number
- Alternative names
Gene names
Encoded on
- Chloroplast
Organism names
- Strain
- Taxonomic lineageEukaryota > Cryptophyceae > Pyrenomonadales > Pyrenomonadaceae > Rhodomonas
Accessions
- Primary accessionA6MVX3
Subcellular Location
PTM/Processing
Features
Showing features for chain.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Chain | PRO_0000353518 | 1-623 | DNA-directed RNA polymerase subunit beta' | |||
Sequence: MAKLEQYFDYVKINLASPERIRKWGERTLPNGQIVGEVTKPETINYRTLKPEMDGLFCERIFGPVKDWECHCGKYKRVRYKGIICERCGVEVAESKVRRHRMGHIELAAPVTHVWYLKSLPSYISILLDIPLKDVEQIVYFNSYIVTRPGNCPNLRYKQLLSEDEWIEIEDQLYQEDSNLYGVEVGIGAEAIQKLLKDVDLEVEAESLREDVLSAKGSKRDKAIKRLRVIDNFIATRSDPAWMILTVLPVIPPDLRPMVQLDGGRFATSDLNDLYRRVLNRNNRLIRLQEILAPEIIIRNEKRMLQESVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRSVIVVGPTLQLNQCGLPREMALELFQPFVIHKLIHQGLVNNIKAAKKMIQKNDSVIWSVLEEVIQGHPVLLNRAPTLHRLGIQAFEPILVEGRAIKLHPLVCPAFNADFDGDQMAVHIPLSLEAQAEARLLMLAPYNFLSPATGEPIIMPSQDMVLGCYYLTTHNPSQQKSQAYYFSNLEDALLAYECKKIALHSYVWVRFEGEVEDENLKIRTSILKEKYTLDIFTERIIKTDEEKKVIAQYILTTPGRILLNKTLFDSLTLSN |
Interaction
Subunit
In plastids the minimal PEP RNA polymerase catalytic core is composed of four subunits: alpha, beta, beta', and beta''. When a (nuclear-encoded) sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription.
Structure
Sequence
- Sequence statusComplete
- Length623
- Mass (Da)71,313
- Last updated2007-07-24 v1
- ChecksumCDBD1D724029CAC5
Sequence databases
Nucleotide Sequence | Protein Sequence | Molecule Type | Status | |
---|---|---|---|---|
EF508371 EMBL· GenBank· DDBJ | ABO70812.1 EMBL· GenBank· DDBJ | Genomic DNA |