A4WRA6 · IDI_CERS5
- ProteinIsopentenyl-diphosphate Delta-isomerase
- Geneidi
- StatusUniProtKB reviewed (Swiss-Prot)
- Amino acids177 (go to sequence)
- Protein existenceInferred from homology
- Annotation score4/5
Function
function
Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP).
Catalytic activity
- isopentenyl diphosphate = dimethylallyl diphosphate
Cofactor
Protein has several cofactor binding sites:
Note: Binds 1 Mg2+ ion per subunit. The magnesium ion binds only when substrate is bound.
Note: Binds 1 Mn2+ ion per subunit.
Pathway
Isoprenoid biosynthesis; dimethylallyl diphosphate biosynthesis; dimethylallyl diphosphate from isopentenyl diphosphate: step 1/1.
Porphyrin-containing compound metabolism; chlorophyll biosynthesis.
Features
Showing features for binding site, active site.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Binding site | 22 | Mn2+ (UniProtKB | ChEBI) | ||||
Sequence: H | ||||||
Binding site | 28 | Mn2+ (UniProtKB | ChEBI) | ||||
Sequence: H | ||||||
Active site | 62 | |||||
Sequence: C | ||||||
Binding site | 64 | Mn2+ (UniProtKB | ChEBI) | ||||
Sequence: H | ||||||
Binding site | 82 | Mg2+ (UniProtKB | ChEBI) | ||||
Sequence: E | ||||||
Binding site | 108 | Mn2+ (UniProtKB | ChEBI) | ||||
Sequence: E | ||||||
Active site | 110 | |||||
Sequence: E | ||||||
Binding site | 110 | Mn2+ (UniProtKB | ChEBI) | ||||
Sequence: E |
GO annotations
Aspect | Term | |
---|---|---|
Cellular Component | cytoplasm | |
Molecular Function | isopentenyl-diphosphate delta-isomerase activity | |
Molecular Function | metal ion binding | |
Biological Process | chlorophyll biosynthetic process | |
Biological Process | dimethylallyl diphosphate biosynthetic process | |
Biological Process | isoprenoid biosynthetic process | |
Biological Process | photosynthesis |
Keywords
- Molecular function
- Biological process
- Ligand
Enzyme and pathway databases
Names & Taxonomy
Protein names
- Recommended nameIsopentenyl-diphosphate Delta-isomerase
- EC number
- Short namesIPP isomerase
- Alternative names
Gene names
Organism names
- Strain
- Taxonomic lineageBacteria > Pseudomonadota > Alphaproteobacteria > Rhodobacterales > Paracoccaceae > Cereibacter
Accessions
- Primary accessionA4WRA6
Subcellular Location
PTM/Processing
Features
Showing features for chain.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Chain | PRO_0000325217 | 1-177 | Isopentenyl-diphosphate Delta-isomerase | |||
Sequence: MPEMVPAWVDGRLMPVEKLEAHQRGLRHKAISVFVMAGESVLIQRRAAGKYHTPGLWANTCCTHPRWGEAAADCAVRRLREELGITGLVTVFADQVEYRADVGSGLIEHEVVDIFVAEAPQDLPVAPDPEEVWETRWVDLHDLAREVEEHPERFTPWLRIYLADHMERIFGKLRVVQ |
Interaction
Protein-protein interaction databases
Structure
Family & Domains
Features
Showing features for domain.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Domain | 26-160 | Nudix hydrolase | ||||
Sequence: LRHKAISVFVMAGESVLIQRRAAGKYHTPGLWANTCCTHPRWGEAAADCAVRRLREELGITGLVTVFADQVEYRADVGSGLIEHEVVDIFVAEAPQDLPVAPDPEEVWETRWVDLHDLAREVEEHPERFTPWLRI |
Sequence similarities
Belongs to the IPP isomerase type 1 family.
Phylogenomic databases
Family and domain databases
Sequence
- Sequence statusComplete
- Length177
- Mass (Da)20,210
- Last updated2008-03-18 v2
- Checksum3D1C50343966123A
Sequence caution
Sequence databases
Nucleotide Sequence | Protein Sequence | Molecule Type | Status | |
---|---|---|---|---|
CP000661 EMBL· GenBank· DDBJ | ABP69920.1 EMBL· GenBank· DDBJ | Genomic DNA | Different initiation |