A4FVJ7 · RBM48_DANRE

Function

function

As a component of the minor spliceosome, involved in the splicing of U12-type introns in pre-mRNAs.

GO annotations

all annotationsall molecular functionvirus receptor activitydna bindingrna bindingcytoskeletal motor activitycatalytic activitygtpase activitystructural molecule activitytransporter activitycytoskeletal protein bindinglipid bindingcyclase activityantioxidant activityoxidoreductase activitytransferase activityhydrolase activitylyase activityisomerase activityligase activityprotein tag activitycargo receptor activityhistone bindingprotein folding chaperonetranslation regulator activitynutrient reservoir activityreceptor ligand activitymolecular transducer activitymolecular adaptor activitytoxin activitycell adhesion mediator activitymolecular function regulator activityvirus coreceptor activitycatalytic activity, acting on a proteincatalytic activity, acting on dnacatalytic activity, acting on rnamolecular carrier activitytranscription regulator activitygeneral transcription initiation factor activitymolecular sensor activitymolecular sequestering activityatp-dependent activityother molecular functionall biological processmitotic cell cyclecytokinesiscytoplasmic translationimmune system processmuscle system processcirculatory system processrenal system processrespiratory system processcarbohydrate metabolic processgeneration of precursor metabolites and energydna replicationdna repairdna recombinationchromatin organizationdna-templated transcriptionregulation of dna-templated transcriptiontrna metabolic processprotein foldingprotein glycosylationamino acid metabolic processmodified amino acid metabolic processlipid metabolic processvitamin metabolic processsulfur compound metabolic processintracellular protein transportnucleocytoplasmic transportautophagyinflammatory responsemitochondrion organizationcytoskeleton organizationmicrotubule-based movementperoxisome organizationlysosome organizationchromosome segregationcell adhesionestablishment or maintenance of cell polarityprogrammed cell deathphotosynthesismrna metabolic processsnrna metabolic processvesicle-mediated transportreproductive processdigestive system processsignalingcell differentiationprotein catabolic processextracellular matrix organizationregulatory ncrna-mediated gene silencingtelomere organizationcell junction organizationwound healingribosome biogenesiscilium organizationanatomical structure developmentcell motilitynervous system processendocrine processprotein maturationtransmembrane transportnucleobase-containing small molecule metabolic processhepaticobiliary system processmembrane organizationprotein-containing complex assemblycell wall organization or biogenesisnitrogen cycle metabolic processprotein localization to plasma membranedefense response to other organismdetoxificationmeiotic nuclear divisionmitotic nuclear divisionmitochondrial gene expressioncarbohydrate derivative metabolic processother biological processall cellular componentnuclear chromosomeextracellular regionextracellular spacecell wallnucleusnuclear envelopenucleoplasmchromosomenucleolusmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuslipid dropletmicrotubule organizing centercytosolribosomecytoskeletonplasma membraneciliumplastidthylakoidexternal encapsulating structureextracellular matrixcytoplasmic vesicleorganelleother cellular component
Cell color indicative of number of GO terms
AspectTerm
Cellular Componentnucleoplasm
Cellular Componentspliceosomal complex
Molecular FunctionRNA binding
Biological ProcessmRNA processing
Biological ProcessRNA splicing

Keywords

Names & Taxonomy

Protein names

  • Recommended name
    RNA-binding protein 48

Gene names

    • Name
      rbm48
    • ORF names
      si:ch211-173p18.5

Organism names

  • Taxonomic identifier
  • Strain
    • Tuebingen
  • Taxonomic lineage
    Eukaryota > Metazoa > Chordata > Craniata > Vertebrata > Euteleostomi > Actinopterygii > Neopterygii > Teleostei > Ostariophysi > Cypriniformes > Danionidae > Danioninae > Danio

Accessions

  • Primary accession
    A4FVJ7
  • Secondary accessions
    • Q1LWY9
    • Q58EL1
    • Q6TEL8

Proteomes

Organism-specific databases

Subcellular Location

Keywords

PTM/Processing

Features

Showing features for chain.

TypeIDPosition(s)Description
ChainPRO_00003604261-364RNA-binding protein 48

Proteomic databases

Interaction

Subunit

Component of the minor spliceosome, which splices U12-type introns.

Protein-protein interaction databases

Structure

Family & Domains

Features

Showing features for domain, compositional bias, region.

Type
IDPosition(s)Description
Domain51-129RRM
Compositional bias157-179Polar residues
Region157-191Disordered
Region239-291Disordered
Compositional bias244-264Polar residues
Region343-364Disordered

Sequence similarities

Belongs to the RBM48 family.

Phylogenomic databases

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    364
  • Mass (Da)
    41,557
  • Last updated
    2007-04-17 v1
  • Checksum
    5F6279EEBB11E5EF
MDGSVASSSVWDTQKVYKHHEQQNVAQTRPKYREGRRLKAVKVYTINLESRYLLVQGVPAIGVMAELVQLFALYGVIEEYRPLDEYPAEQFTEVYLIQFQKLTSARAAKRHTDEKSFFGGQLHVCYAPEYETVEETKQKLQDRRRYVNWASQNAAKLHSQQAEVNTESSSSTDTRTAEAPIMQKNPEEARRENVNSDYMGFPLLPLPPTADISYRLQNHFTQPSQLQWTKETTEDKMGSLHNFIPPVQKTSTQSESSSSSGVKEGDLRQKQKISTPSIRFMPRTTHLESRKRKLDEQTFFLKEADKTGVLIGPKLPELPKLDMEDSSLNVTANLIRNTMTKAASVPEAKPVQAKHTTPKPRRRI

Computationally mapped potential isoform sequences

There is 1 potential isoform mapped to this entry

View all
EntryEntry nameGene nameLength
Z4YHP6Z4YHP6_DANRErbm48364

Sequence caution

The sequence AAQ98007.1 differs from that shown. Reason: Frameshift

Features

Showing features for sequence conflict, compositional bias.

Type
IDPosition(s)Description
Sequence conflict90in Ref. 2; CAK04237
Sequence conflict152in Ref. 2; CAK04237
Sequence conflict156in Ref. 2; CAK04237
Compositional bias157-179Polar residues
Sequence conflict181in Ref. 1; AAQ98007 and 2; CAK04237
Sequence conflict230in Ref. 1; AAQ98007 and 2; CAK04237
Compositional bias244-264Polar residues
Sequence conflict352in Ref. 2; CAK04237

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
AY423031
EMBL· GenBank· DDBJ
AAQ98007.1
EMBL· GenBank· DDBJ
mRNA Frameshift
BX510986
EMBL· GenBank· DDBJ
CAK04237.1
EMBL· GenBank· DDBJ
Genomic DNA
BC091857
EMBL· GenBank· DDBJ
AAH91857.1
EMBL· GenBank· DDBJ
mRNA
BC134007
EMBL· GenBank· DDBJ
AAI34008.1
EMBL· GenBank· DDBJ
mRNA

Similar Proteins

Disclaimer

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