A3GH91 · DBP5_PICST
- ProteinATP-dependent RNA helicase DBP5
- GeneDBP5
- StatusUniProtKB reviewed (Swiss-Prot)
- Amino acids500 (go to sequence)
- Protein existenceInferred from homology
- Annotation score4/5
Function
function
ATP-dependent RNA helicase associated with the nuclear pore complex and essential for mRNA export from the nucleus. May participate in a terminal step of mRNA export through the removal of proteins that accompany mRNA through the nucleopore complex. May also be involved in early transcription (By similarity).
Catalytic activity
- ATP + H2O = ADP + H+ + phosphate
Features
Showing features for binding site.
GO annotations
all annotations | all molecular function | virus receptor activity | dna binding | rna binding | cytoskeletal motor activity | catalytic activity | gtpase activity | structural molecule activity | transporter activity | cytoskeletal protein binding | lipid binding | cyclase activity | antioxidant activity | oxidoreductase activity | transferase activity | hydrolase activity | lyase activity | isomerase activity | ligase activity | protein tag activity | cargo receptor activity | histone binding | protein folding chaperone | translation regulator activity | nutrient reservoir activity | receptor ligand activity | molecular transducer activity | molecular adaptor activity | toxin activity | cell adhesion mediator activity | molecular function regulator activity | virus coreceptor activity | catalytic activity, acting on a protein | catalytic activity, acting on dna | catalytic activity, acting on rna | molecular carrier activity | transcription regulator activity | general transcription initiation factor activity | molecular sensor activity | molecular sequestering activity | atp-dependent activity | other molecular function | all biological process | mitotic cell cycle | cytokinesis | cytoplasmic translation | immune system process | muscle system process | circulatory system process | renal system process | respiratory system process | carbohydrate metabolic process | generation of precursor metabolites and energy | dna replication | dna repair | dna recombination | chromatin organization | dna-templated transcription | regulation of dna-templated transcription | trna metabolic process | protein folding | protein glycosylation | amino acid metabolic process | modified amino acid metabolic process | lipid metabolic process | vitamin metabolic process | sulfur compound metabolic process | intracellular protein transport | nucleocytoplasmic transport | autophagy | inflammatory response | mitochondrion organization | cytoskeleton organization | microtubule-based movement | peroxisome organization | lysosome organization | chromosome segregation | cell adhesion | establishment or maintenance of cell polarity | programmed cell death | photosynthesis | mrna metabolic process | snrna metabolic process | vesicle-mediated transport | reproductive process | digestive system process | signaling | cell differentiation | protein catabolic process | extracellular matrix organization | regulatory ncrna-mediated gene silencing | telomere organization | cell junction organization | wound healing | ribosome biogenesis | cilium organization | anatomical structure development | cell motility | nervous system process | endocrine process | protein maturation | transmembrane transport | nucleobase-containing small molecule metabolic process | hepaticobiliary system process | membrane organization | protein-containing complex assembly | cell wall organization or biogenesis | nitrogen cycle metabolic process | protein localization to plasma membrane | defense response to other organism | detoxification | meiotic nuclear division | mitotic nuclear division | mitochondrial gene expression | carbohydrate derivative metabolic process | other biological process | all cellular component | nuclear chromosome | extracellular region | extracellular space | cell wall | nucleus | nuclear envelope | nucleoplasm | chromosome | nucleolus | mitochondrion | lysosome | endosome | vacuole | peroxisome | endoplasmic reticulum | golgi apparatus | lipid droplet | microtubule organizing center | cytosol | ribosome | cytoskeleton | plasma membrane | cilium | plastid | thylakoid | external encapsulating structure | extracellular matrix | cytoplasmic vesicle | organelle | other cellular component | |||
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Aspect | Term | |
---|---|---|
Cellular Component | cytoplasm | |
Cellular Component | nuclear membrane | |
Cellular Component | nuclear pore | |
Molecular Function | ATP binding | |
Molecular Function | ATP hydrolysis activity | |
Molecular Function | RNA binding | |
Molecular Function | RNA helicase activity | |
Biological Process | mRNA transport | |
Biological Process | protein transport |
Keywords
- Molecular function
- Biological process
- Ligand
Enzyme and pathway databases
Names & Taxonomy
Protein names
- Recommended nameATP-dependent RNA helicase DBP5
- EC number
Gene names
Organism names
- Strain
- Taxonomic lineageEukaryota > Fungi > Dikarya > Ascomycota > Saccharomycotina > Saccharomycetes > Saccharomycetales > Debaryomycetaceae > Scheffersomyces
Accessions
- Primary accessionA3GH91
Proteomes
Subcellular Location
UniProt Annotation
GO Annotation
Nucleus membrane ; Peripheral membrane protein
Note: Nuclear pore complex cytoplasmic fibrils.
Keywords
- Cellular component
PTM/Processing
Features
Showing features for chain.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Chain | PRO_0000285143 | 1-500 | ATP-dependent RNA helicase DBP5 | |||
Sequence: MSAEKRVEADAAELLSSLSLGESPAEKKDEKTEEVKKEEAKSEELNKVVEKTEEKVKEANAEDAKPEELKEVGKEENEEPKTNLIQSTYEVKVKLADIQADPNSPLFSVKSFEELGLTPELLKGLYAMKFNKPSKIQEKALPLLISNPPRNMIGQSQSGTGKTAAFSLTMLSRVDPKVPSTQCLCLAPTRELARQTLEVISTMGKFTNITTQLIVPDALPRGSSTNAHIIVGTPGIVMDLIRRKQINVNGVKVFVLDEADNMLDAQGLGDQCVRVKRTLPKTTQLVLFSATFPTKVRQYAEKFVPNANSLELKQEELNVDGIKQLYMDCDSEKHKFEVLCELYGLLTIGSSIIFVERKDTANLLYAKMKAEGHACSILHGGLETSERDRLIDDFREGRSKVLITTNVLARGIDIASVSMVVNYDLPTDKDGNADPSTYLHRIGRTGRFGRVGVSISFIYDKRSYEILMKIKDYFGNVEMTRVPTDDWDEVEKIVKKVIKS |
Interaction
Structure
Family & Domains
Features
Showing features for region, compositional bias, motif, domain.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Region | 1-83 | Disordered | ||||
Sequence: MSAEKRVEADAAELLSSLSLGESPAEKKDEKTEEVKKEEAKSEELNKVVEKTEEKVKEANAEDAKPEELKEVGKEENEEPKTN | ||||||
Compositional bias | 23-81 | Basic and acidic residues | ||||
Sequence: SPAEKKDEKTEEVKKEEAKSEELNKVVEKTEEKVKEANAEDAKPEELKEVGKEENEEPK | ||||||
Motif | 110-138 | Q motif | ||||
Sequence: KSFEELGLTPELLKGLYAMKFNKPSKIQE | ||||||
Domain | 143-310 | Helicase ATP-binding | ||||
Sequence: LLISNPPRNMIGQSQSGTGKTAAFSLTMLSRVDPKVPSTQCLCLAPTRELARQTLEVISTMGKFTNITTQLIVPDALPRGSSTNAHIIVGTPGIVMDLIRRKQINVNGVKVFVLDEADNMLDAQGLGDQCVRVKRTLPKTTQLVLFSATFPTKVRQYAEKFVPNANSL | ||||||
Motif | 257-260 | DEAD box | ||||
Sequence: DEAD | ||||||
Domain | 321-498 | Helicase C-terminal | ||||
Sequence: GIKQLYMDCDSEKHKFEVLCELYGLLTIGSSIIFVERKDTANLLYAKMKAEGHACSILHGGLETSERDRLIDDFREGRSKVLITTNVLARGIDIASVSMVVNYDLPTDKDGNADPSTYLHRIGRTGRFGRVGVSISFIYDKRSYEILMKIKDYFGNVEMTRVPTDDWDEVEKIVKKVI |
Domain
The Q motif is unique to and characteristic of the DEAD box family of RNA helicases and controls ATP binding and hydrolysis.
Sequence similarities
Belongs to the DEAD box helicase family. DDX19/DBP5 subfamily.
Phylogenomic databases
Family and domain databases
Sequence
- Sequence statusComplete
- Length500
- Mass (Da)55,710
- Last updated2010-01-19 v2
- Checksum20244888F299586A
Features
Showing features for compositional bias.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Compositional bias | 23-81 | Basic and acidic residues | ||||
Sequence: SPAEKKDEKTEEVKKEEAKSEELNKVVEKTEEKVKEANAEDAKPEELKEVGKEENEEPK |
Keywords
- Technical term
Sequence databases
Nucleotide Sequence | Protein Sequence | Molecule Type | Status | |
---|---|---|---|---|
AAVQ01000002 EMBL· GenBank· DDBJ | EAZ62775.2 EMBL· GenBank· DDBJ | Genomic DNA |