A3BPF2 · ROC7_ORYSJ

Function

function

Probable transcription factor.

Features

Showing features for dna binding.

1749100200300400500600700
TypeIDPosition(s)Description
DNA binding88-147Homeobox

GO annotations

all annotationsall molecular functionnucleotide bindingmolecular_functionnucleic acid bindingdna bindingchromatin bindingdna-binding transcription factor activityrna bindingcytoskeletal motor activitycatalytic activitynuclease activitysignaling receptor bindingstructural molecule activitytransporter activitybindingprotein bindingtranslation factor activity, rna bindinglipid bindingkinase activitytransferase activityhydrolase activityoxygen bindingenzyme regulator activitycarbohydrate bindingsignaling receptor activitytranslation regulator activitytranscription regulator activityother molecular functionall biological processcarbohydrate metabolic processgeneration of precursor metabolites and energynucleobase-containing compound metabolic processdna metabolic processtranslationlipid metabolic processtransportresponse to stresscell cyclecell communicationsignal transductioncell-cell signalingmulticellular organism developmentcircadian rhythmbiological_processmetabolic processcatabolic processbiosynthetic processresponse to light stimulusresponse to external stimulustropismresponse to biotic stimulusresponse to abiotic stimulusresponse to endogenous stimulusembryo developmentpost-embryonic developmentfruit ripeningabscissionpollinationflower developmentcellular processprogrammed cell deathphotosynthesiscellular component organizationcell growthprotein metabolic processcellular homeostasissecondary metabolic processreproductive processcell differentiationprotein modification processgrowthepigenetic regulation of gene expressionresponse to chemicalanatomical structure developmentregulation of molecular functionother biological processall cellular componentcellular_componentextracellular regioncell wallintracellular anatomical structurenucleusnuclear envelopenucleoplasmnucleoluscytoplasmmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuscytosolribosomecytoskeletonplasma membranechloroplastplastidthylakoidmembraneexternal encapsulating structureother cellular component
Cell color indicative of number of GO terms
AspectTerm
Cellular Componentnucleus
Molecular FunctionDNA binding
Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specific
Molecular Functionlipid binding

Keywords

Names & Taxonomy

Protein names

  • Recommended name
    Homeobox-leucine zipper protein ROC7
  • Alternative names
    • GLABRA 2-like homeobox protein 7
    • HD-ZIP protein ROC7
    • Homeodomain transcription factor ROC7
    • Protein RICE OUTERMOST CELL-SPECIFIC 7

Gene names

    • Name
      ROC7
    • Synonyms
      GL2-7
    • ORF names
      OJ1613_G04.7, OsJ_024924, P0680F05.46
    • Ordered locus names
      Os08g0136100, Os08g0136000, LOC_Os08g04190

Organism names

  • Taxonomic identifier
  • Strain
    • cv. Nipponbare
  • Taxonomic lineage
    Eukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > Liliopsida > Poales > Poaceae > BOP clade > Oryzoideae > Oryzeae > Oryzinae > Oryza > Oryza sativa

Accessions

  • Primary accession
    A3BPF2
  • Secondary accessions
    • Q0J854
    • Q0J855
    • Q6YYB8
    • Q7Y0V6

Proteomes

Subcellular Location

Keywords

PTM/Processing

Features

Showing features for chain.

TypeIDPosition(s)Description
ChainPRO_00003317451-749Homeobox-leucine zipper protein ROC7

Proteomic databases

Interaction

Protein-protein interaction databases

Structure

Family & Domains

Features

Showing features for region, compositional bias, coiled coil, domain.

TypeIDPosition(s)Description
Region26-98Disordered
Compositional bias31-46Polar residues
Coiled coil137-218
Domain256-494START

Sequence similarities

Keywords

Phylogenomic databases

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    749
  • Mass (Da)
    80,854
  • Last updated
    2007-03-20 v1
  • Checksum
    F5BBD9D39B497EC8
MQSLLDGHHHQLPSLLQQHHNGHHLLDQHQQHQHQLPPQATTTSESDGRAPRDELEMSKSGGSDNLESGGGGGGGGSGGDQDPNQRPRKKRYHRHTQHQIQELEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENNALRAENEKLRAENMRYKEALANASCPNCGGPAAIGEMSFDEHHLRLENARLRDEIDRISAIAAKYVGKPAAAVSAAYPPLPPSNRSPLDHMGIPGAGADVFGADFDKPLVIELAVAAMEELVRMAQLGEPLWAPALGGEALGEEEYARTFPRGLGPKSPELRSEASRETAVVIMNHVSLVEMLMDVGQWTALFSSIVSRAATLEVLSTGVAGNHNGALQLMSAEFQMPSPLVPTRETQFLRYCKQHPDGTWAVVDVSLDGLRAGAGGGCQPAAARGHRRRPSGCLIQEMPNGYSKVTWVEHVEADDQMVHNLYKPVVNSGMAFGARRWVATLERQCERLASAMASNVASSGDAGVITTSEGRRSMLKLAERMVASFCGGVTASTTHQWTTLSGSGAEDVRVMTRKSVDDPGRPPGIILNAATSFWLPVPPSRVFDFLRDDSTRSEWDILSNGGVVQEMAHIANGRDHGNAVSLLRVNNANSNQSNMLILQECCTDATGSYVIYAPVDVVAMNVVLNGGDPDYVALLPSGFAILPDGPDGGGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLIACTVERIKAAITGDNGVAPPCPR

Computationally mapped potential isoform sequences

There is 1 potential isoform mapped to this entry

View all
EntryEntry nameGene nameLength
B9FYY9B9FYY9_ORYSJOs08g0136100785

Sequence caution

The sequence BAD03062.1 differs from that shown. Reason: Erroneous gene model prediction
The sequence BAD16310.1 differs from that shown. Reason: Erroneous gene model prediction
The sequence BAF22861.1 differs from that shown. Reason: Erroneous gene model prediction

Features

Showing features for compositional bias.

TypeIDPosition(s)Description
Compositional bias31-46Polar residues

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
AP003896
EMBL· GenBank· DDBJ
BAD03062.1
EMBL· GenBank· DDBJ
Genomic DNA Sequence problems.
AP005620
EMBL· GenBank· DDBJ
BAD16310.1
EMBL· GenBank· DDBJ
Genomic DNA Sequence problems.
AP008214
EMBL· GenBank· DDBJ
BAF22861.1
EMBL· GenBank· DDBJ
Genomic DNA Sequence problems.
AP014964
EMBL· GenBank· DDBJ
-Genomic DNA No translation available.
CM000145
EMBL· GenBank· DDBJ
-Genomic DNA No translation available.
AB101650
EMBL· GenBank· DDBJ
BAC77160.1
EMBL· GenBank· DDBJ
mRNA

Similar Proteins

Disclaimer

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