A2YAA5 · ARFP_ORYSI

Function

function

Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).

Features

Showing features for dna binding.

110551002003004005006007008009001,000
TypeIDPosition(s)Description
DNA binding127-229TF-B3

GO annotations

all annotationsall molecular functionnucleotide bindingmolecular_functionnucleic acid bindingdna bindingchromatin bindingdna-binding transcription factor activityrna bindingcytoskeletal motor activitycatalytic activitynuclease activitysignaling receptor bindingstructural molecule activitytransporter activitybindingprotein bindingtranslation factor activity, rna bindinglipid bindingkinase activitytransferase activityhydrolase activityoxygen bindingenzyme regulator activitycarbohydrate bindingsignaling receptor activitytranslation regulator activitytranscription regulator activityother molecular functionall biological processcarbohydrate metabolic processgeneration of precursor metabolites and energynucleobase-containing compound metabolic processdna metabolic processtranslationlipid metabolic processtransportresponse to stresscell cyclecell communicationsignal transductioncell-cell signalingmulticellular organism developmentcircadian rhythmbiological_processmetabolic processcatabolic processbiosynthetic processresponse to light stimulusresponse to external stimulustropismresponse to biotic stimulusresponse to abiotic stimulusresponse to endogenous stimulusembryo developmentpost-embryonic developmentfruit ripeningabscissionpollinationflower developmentcellular processprogrammed cell deathphotosynthesiscellular component organizationcell growthprotein metabolic processcellular homeostasissecondary metabolic processreproductive processcell differentiationprotein modification processgrowthepigenetic regulation of gene expressionresponse to chemicalanatomical structure developmentregulation of molecular functionother biological processall cellular componentcellular_componentextracellular regioncell wallintracellular anatomical structurenucleusnuclear envelopenucleoplasmnucleoluscytoplasmmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuscytosolribosomecytoskeletonplasma membranechloroplastplastidthylakoidmembraneexternal encapsulating structureother cellular component
Cell color indicative of number of GO terms
AspectTerm
Cellular Componentnucleus
Molecular FunctionDNA binding
Biological Processauxin-activated signaling pathway
Biological Processregulation of DNA-templated transcription

Keywords

Names & Taxonomy

Protein names

  • Recommended name
    Auxin response factor 16

Gene names

    • Name
      ARF16
    • ORF names
      OsI_021248

Organism names

  • Taxonomic identifier
  • Strain
    • cv. 93-11
  • Taxonomic lineage
    Eukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > Liliopsida > Poales > Poaceae > BOP clade > Oryzoideae > Oryzeae > Oryzinae > Oryza > Oryza sativa

Accessions

  • Primary accession
    A2YAA5

Proteomes

Genome annotation databases

Subcellular Location

Keywords

PTM/Processing

Features

Showing features for chain.

TypeIDPosition(s)Description
ChainPRO_00002992731-1055Auxin response factor 16

Interaction

Subunit

Homodimers and heterodimers.

Protein-protein interaction databases

Structure

Family & Domains

Features

Showing features for region, compositional bias, domain.

Type
IDPosition(s)Description
Region485-510Disordered
Compositional bias532-552Polar residues
Region532-565Disordered
Region585-609Disordered
Region701-720Disordered
Region732-769Disordered
Domain940-1024PB1
Region1034-1055Disordered

Domain

Interactions between auxin response factors (ARFs) and Aux/IAA proteins occur through their C-terminal dimerization domains III and IV.

Sequence similarities

Belongs to the ARF family.

Phylogenomic databases

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    1,055
  • Mass (Da)
    116,889
  • Last updated
    2007-03-20 v1
  • MD5 Checksum
    5E92E9BFBDE0A9D3D040D5DAB95418A3
MKDQGSSGVSPAPGEGEKKAINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMHKELDNIPGYPSLPSKLICKLLSLTLHADSETDEVYVQMTLQPVNKYDRDAMLASELGLKQNKQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFTMQPPAQELIAKDLHDISWKFRHIYRGQPKRHLLTTGWSVFVSTKRLLAGDSVLFIRDEKSQLLLGIRRATRPQPALSSSVLSSDSMHIGILAAAAHAAANSSPFTIFYNPRASPSEFVIPLAKYNKALYTQVSLGMRFRMLFETEDSGVRRYMGTITGIGDLDPVRWKNSHWRNLQVGWDESTASERRTRVSIWEIEPVATPFYICPPPFFRPKLPKQPGMPDDENEVESAFKRAMPWLADDFALKDVQSALFPGLSLVQWMAMQQNPQMLTAASQTVQSPYLNSNALAMQDVMGSSNEDPTKRLNTQAQNMVLPNLQVGSKVDHPVMSQHQQQPHQLSQQQQVQPSQQSSVVLQQHQAQLLQQNAIHLQQQQEHLQRQQSQPAQQLKAASSLHSVEQHKLKEQTSGGQVASQAQMLNQIFPPSSSQLQQLGLPKSPTHRQGLTGLPIAGSLQQPTLTQTSQVQQAAEYQQALLQSQQQQQQLQLQQLSQPEVQLQLLQKIQQQNMLSQLNPQHQSQLIQQLSQKSQEILQQQILQHQFGGSDSIGQLKQSPSQQAPLNHMTGSLTPQQLVRSHSALAESGDPSSSTAPSTSRISPINSLSRANQGSRNLTDMVATPQIDNLLQEIQSKPDNRIKNDIQSKETVPIHNRHPVSDQLDASSATSFCLDESPREGFSFPPVCLDNNVQVDPRDNFLIAENVDALMPDALLSRGMASGKGMCTLTSGQRDHRDVENELSSAAFSSQSFGVPDMSFKPGCSSDVAVTDAGMPSQGLWNNQTQRMRTFTKVQKRGSVGRSIDITRYRDYDELRHDLACMFGIQGQLEDPYRMDWKLVYVDHENDILLVGDDPWEEFVGCVKSIKILSAAEVQQMSLDGDLGGVPPQTQACSASDDANAWRG

Features

Showing features for compositional bias.

TypeIDPosition(s)Description
Compositional bias532-552Polar residues

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
CM000131
EMBL· GenBank· DDBJ
EAZ00016.1
EMBL· GenBank· DDBJ
Genomic DNA

Genome annotation databases

Similar Proteins

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