A0AAP6RXY4 · A0AAP6RXY4_9GAMM

  • Protein
    Purine nucleoside phosphorylase DeoD-type
  • Gene
    deoD
  • Status
    UniProtKB unreviewed (TrEMBL)
  • Amino acids
  • Protein existence
    Inferred from homology
  • Annotation score
    2/5

Function

function

Catalyzes the reversible phosphorolytic breakdown of the N-glycosidic bond in the beta-(deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.

Catalytic activity

Features

Showing features for binding site, active site, site.

Type
IDPosition(s)Description
Binding site5a purine D-ribonucleoside (UniProtKB | ChEBI); ligand shared between dimeric partners
Binding site21phosphate (UniProtKB | ChEBI); ligand shared between dimeric partners; in other chain
Binding site25phosphate (UniProtKB | ChEBI); ligand shared between dimeric partners; in other chain
Binding site44phosphate (UniProtKB | ChEBI); ligand shared between dimeric partners
Binding site88-91phosphate (UniProtKB | ChEBI); ligand shared between dimeric partners; in other chain
Binding site180-182a purine D-ribonucleoside (UniProtKB | ChEBI); ligand shared between dimeric partners; in other chain
Binding site204-205a purine D-ribonucleoside (UniProtKB | ChEBI); ligand shared between dimeric partners; in other chain
Active site205Proton donor
Site218Important for catalytic activity

Keywords

Enzyme and pathway databases

Names & Taxonomy

Protein names

  • Recommended name
    Purine nucleoside phosphorylase DeoD-type
  • EC number
  • Short names
    PNP

Gene names

    • Name
      deoD
    • ORF names
      JRZ91_03250

Organism names

  • Taxonomic identifier
  • Organism
  • Strain
    • 16LI01
  • Taxonomic lineage
    Bacteria > Pseudomonadota > Gammaproteobacteria > Enterobacterales > Pectobacteriaceae > Dickeya

Accessions

  • Primary accession
    A0AAP6RXY4

Proteomes

Interaction

Subunit

Homohexamer; trimer of homodimers.

Family & Domains

Features

Showing features for domain.

TypeIDPosition(s)Description
Domain16-225Nucleoside phosphorylase

Sequence similarities

Belongs to the PNP/UDP phosphorylase family.

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    241
  • Mass (Da)
    26,104
  • Last updated
    2024-10-02 v1
  • Checksum
    E2E2EE6250E65EB6
MATPHINAEMGDFADVVLMPGDPLRAKYIAETFLENAVEVNNVRGMLGFTGTYKGRRISVMGHGMGIPSCSIYTKELITEYGVKKIIRVGSCGAVRADVKLRDVVIGMGACTDSKVNRMRFKDHDFAAIADFDLLRHAVAAAKARGIDARVGNLFSADLFYTPDPQMFDVMEKYGILGVEMEAAGIYGVAAEFGAKALAICTVSDHIRTHEQTTAAERQTTFNEMIEIALESVLLGDAAEA

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
CP069603
EMBL· GenBank· DDBJ
QVH72394.1
EMBL· GenBank· DDBJ
Genomic DNA

Genome annotation databases

Similar Proteins

Disclaimer

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