A0AAD1KDK5 · A0AAD1KDK5_9GAMM

  • Protein
    3'-phosphate/5'-hydroxy nucleic acid ligase
  • Status
    UniProtKB unreviewed (TrEMBL)
  • Amino acids
  • Protein existence
    Predicted
  • Annotation score
    2/5

Function

Cofactor

Mn2+ (UniProtKB | Rhea| CHEBI:29035 )

Note: Binds 2 manganese ions per subunit.

Features

Showing features for binding site, active site.

138750100150200250300350
TypeIDPosition(s)Description
Binding site74Mn2+ 1 (UniProtKB | ChEBI)
Binding site140-144GMP (UniProtKB | ChEBI)
Binding site141Mn2+ 1 (UniProtKB | ChEBI)
Binding site172Mn2+ 2 (UniProtKB | ChEBI)
Binding site243Mn2+ 2 (UniProtKB | ChEBI)
Binding site243-244GMP (UniProtKB | ChEBI)
Binding site281GMP (UniProtKB | ChEBI)
Active site303GMP-histidine intermediate
Binding site303-306GMP (UniProtKB | ChEBI)
Binding site381GMP (UniProtKB | ChEBI)

GO annotations

all annotationsall molecular functionvirus receptor activitydna bindingrna bindingcytoskeletal motor activitycatalytic activitygtpase activitystructural molecule activitytransporter activitycytoskeletal protein bindinglipid bindingcyclase activityantioxidant activityoxidoreductase activitytransferase activityhydrolase activitylyase activityisomerase activityligase activityprotein tag activitycargo receptor activityhistone bindingprotein folding chaperonetranslation regulator activitynutrient reservoir activityreceptor ligand activitymolecular transducer activitymolecular adaptor activitytoxin activitycell adhesion mediator activitymolecular function regulator activityvirus coreceptor activitycatalytic activity, acting on a proteincatalytic activity, acting on dnacatalytic activity, acting on rnamolecular carrier activitytranscription regulator activitygeneral transcription initiation factor activitymolecular sensor activitymolecular sequestering activityatp-dependent activityother molecular functionall biological processmitotic cell cyclecytokinesiscytoplasmic translationimmune system processmuscle system processcirculatory system processrenal system processrespiratory system processcarbohydrate metabolic processgeneration of precursor metabolites and energydna replicationdna repairdna recombinationchromatin organizationdna-templated transcriptionregulation of dna-templated transcriptiontrna metabolic processprotein foldingprotein glycosylationamino acid metabolic processmodified amino acid metabolic processlipid metabolic processvitamin metabolic processsulfur compound metabolic processintracellular protein transportnucleocytoplasmic transportautophagyinflammatory responsemitochondrion organizationcytoskeleton organizationmicrotubule-based movementperoxisome organizationlysosome organizationchromosome segregationcell adhesionestablishment or maintenance of cell polarityprogrammed cell deathphotosynthesismrna metabolic processsnrna metabolic processvesicle-mediated transportreproductive processdigestive system processsignalingcell differentiationprotein catabolic processextracellular matrix organizationregulatory ncrna-mediated gene silencingtelomere organizationcell junction organizationwound healingribosome biogenesiscilium organizationanatomical structure developmentcell motilitynervous system processendocrine processprotein maturationtransmembrane transportnucleobase-containing small molecule metabolic processhepaticobiliary system processmembrane organizationprotein-containing complex assemblycell wall organization or biogenesisnitrogen cycle metabolic processprotein localization to plasma membranedefense response to other organismdetoxificationmeiotic nuclear divisionmitotic nuclear divisionmitochondrial gene expressioncarbohydrate derivative metabolic processother biological processall cellular componentnuclear chromosomeextracellular regionextracellular spacecell wallnucleusnuclear envelopenucleoplasmchromosomenucleolusmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuslipid dropletmicrotubule organizing centercytosolribosomecytoskeletonplasma membraneciliumplastidthylakoidexternal encapsulating structureextracellular matrixcytoplasmic vesicleorganelleother cellular component
Cell color indicative of number of GO terms
AspectTerm
Molecular FunctionGTP binding
Molecular Functionligase activity
Molecular Functionmetal ion binding
Biological ProcessRNA processing
Biological ProcessRNA repair

Keywords

Enzyme and pathway databases

Names & Taxonomy

Protein names

  • Recommended name
    3'-phosphate/5'-hydroxy nucleic acid ligase
  • EC number

Gene names

    • ORF names
      TUM17379_36190

Organism names

  • Taxonomic identifier
  • Organism
  • Strain
    • TUM17379
  • Taxonomic lineage
    Bacteria > Pseudomonadota > Gammaproteobacteria > Alteromonadales > Shewanellaceae > Shewanella

Accessions

  • Primary accession
    A0AAD1KDK5

Proteomes

Family & Domains

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    387
  • Mass (Da)
    42,356
  • Last updated
    2024-05-29 v1
  • Checksum
    961D3F14E3419145
MGRSVQKLTESVSLIASKETWVEGLAIQQLIKTSELACMQHVAGMPDLHPGRGYPIGAAFFAVSRIYPALVGNDIGCGMSLWQSSLKLSKVKLDKMANKFKQIEQPLDETWAQTIAERKREKGIAITGFDQALGTIGAGNHFAEFQAIETVYDQAALQELGLDSRYLQLLVHSGSRGLGQAILQEHIRRHSHQGLSPEDSEFSDYLAKHDEALRWAELNRELIACRFLEAINSSGSLVLDVNHNLVSPKCINGTQGWLHRKGATPSDKGYVVIPGSRGDYSYLVKPCAAAGDAADISLFSLAHGAGRKWQRGECQGRLAHKFSREDLYLTALGSRVICGNKTLLYDEAPQAYKKCATVIGDMVDAGLIEVVARLRPVLTFKTNGECC

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
AP024613
EMBL· GenBank· DDBJ
BCV46601.1
EMBL· GenBank· DDBJ
Genomic DNA

Similar Proteins

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