A0AA43QIP6 · A0AA43QIP6_9LECA

  • Protein
    Exosome nuclease subunit
  • Gene
    RRP6
  • Status
    UniProtKB unreviewed (TrEMBL)
  • Amino acids
  • Protein existence
    Inferred from homology
  • Annotation score
    3/5

Function

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.

GO annotations

all annotationsall molecular functionvirus receptor activitydna bindingrna bindingcytoskeletal motor activitycatalytic activitygtpase activitystructural molecule activitytransporter activitycytoskeletal protein bindinglipid bindingcyclase activityantioxidant activityoxidoreductase activitytransferase activityhydrolase activitylyase activityisomerase activityligase activityprotein tag activitycargo receptor activityhistone bindingprotein folding chaperonetranslation regulator activitynutrient reservoir activityreceptor ligand activitymolecular transducer activitymolecular adaptor activitytoxin activitycell adhesion mediator activitymolecular function regulator activityvirus coreceptor activitycatalytic activity, acting on a proteincatalytic activity, acting on dnacatalytic activity, acting on rnamolecular carrier activitytranscription regulator activitygeneral transcription initiation factor activitymolecular sensor activitymolecular sequestering activityatp-dependent activityother molecular functionall biological processmitotic cell cyclecytokinesiscytoplasmic translationimmune system processmuscle system processcirculatory system processrenal system processrespiratory system processcarbohydrate metabolic processgeneration of precursor metabolites and energydna replicationdna repairdna recombinationchromatin organizationdna-templated transcriptionregulation of dna-templated transcriptiontrna metabolic processprotein foldingprotein glycosylationamino acid metabolic processmodified amino acid metabolic processlipid metabolic processvitamin metabolic processsulfur compound metabolic processintracellular protein transportnucleocytoplasmic transportautophagyinflammatory responsemitochondrion organizationcytoskeleton organizationmicrotubule-based movementperoxisome organizationlysosome organizationchromosome segregationcell adhesionestablishment or maintenance of cell polarityprogrammed cell deathphotosynthesismrna metabolic processsnrna metabolic processvesicle-mediated transportreproductive processdigestive system processsignalingcell differentiationprotein catabolic processextracellular matrix organizationregulatory ncrna-mediated gene silencingtelomere organizationcell junction organizationwound healingribosome biogenesiscilium organizationanatomical structure developmentcell motilitynervous system processendocrine processprotein maturationtransmembrane transportnucleobase-containing small molecule metabolic processhepaticobiliary system processmembrane organizationprotein-containing complex assemblycell wall organization or biogenesisnitrogen cycle metabolic processprotein localization to plasma membranedefense response to other organismdetoxificationmeiotic nuclear divisionmitotic nuclear divisionmitochondrial gene expressioncarbohydrate derivative metabolic processother biological processall cellular componentnuclear chromosomeextracellular regionextracellular spacecell wallnucleusnuclear envelopenucleoplasmchromosomenucleolusmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuslipid dropletmicrotubule organizing centercytosolribosomecytoskeletonplasma membraneciliumplastidthylakoidexternal encapsulating structureextracellular matrixcytoplasmic vesicleorganelleother cellular component
Cell color indicative of number of GO terms
AspectTerm
Cellular Componentnuclear exosome (RNase complex)
Cellular Componentnucleolus
Molecular Function3'-5'-RNA exonuclease activity
Molecular Functionnucleotide binding
Molecular Functionsingle-stranded RNA binding
Biological Processexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Biological Processhistone mRNA catabolic process
Biological Processnuclear polyadenylation-dependent antisense transcript catabolic process
Biological Processnuclear polyadenylation-dependent CUT catabolic process
Biological Processnuclear polyadenylation-dependent rRNA catabolic process
Biological Processnuclear polyadenylation-dependent snoRNA catabolic process
Biological Processnuclear polyadenylation-dependent snRNA catabolic process
Biological Processpoly(A)-dependent snoRNA 3'-end processing
Biological ProcessTRAMP-dependent tRNA surveillance pathway

Keywords

Names & Taxonomy

Protein names

  • Submitted names
    • Exosome nuclease subunit

Gene names

    • Name
      RRP6
    • ORF names
      OHK93_000164

Organism names

  • Taxonomic identifier
  • Organism
  • Strain
    • LIQ254RAFAR
  • Taxonomic lineage
    Eukaryota > Fungi > Dikarya > Ascomycota > Pezizomycotina > Lecanoromycetes > OSLEUM clade > Lecanoromycetidae > Lecanorales > Lecanorineae > Ramalinaceae > Ramalina

Accessions

  • Primary accession
    A0AA43QIP6

Proteomes

Subcellular Location

Keywords

  • Cellular component

Family & Domains

Features

Showing features for domain, region, compositional bias.

Type
IDPosition(s)Description
Domain454-535HRDC
Region642-820Disordered
Compositional bias657-718Polar residues
Compositional bias719-759Basic and acidic residues

Sequence similarities

Belongs to the exosome component 10/RRP6 family.

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    820
  • Mass (Da)
    92,214
  • Last updated
    2024-01-24 v1
  • Checksum
    F03A835F825C21CE
MSGMNGTISFQELNDGITTALLDATRTAGQISGEDLAFQRSSNPTLVPLLDRQTSRLLSLVNNLGQHATSGGPVAHTRIKDLDSLEDNWTHLIEVFDHLLERADACLDEFTGVITRLSPSQEELIKNPPNLPGRKKLDRAFQTQNIAKPQLLFQHPSSNHNETSFKPLLNAKPHAIVPLEASIRLEDSENEPKHYVHPYESEIQLAPTPASATVRAEPIPYLPFESTQATLVDTPEGVRLMLDELKSASEIAIDLEHHDEHSYIGLVSLMQISTRQKDWVVDTLKPWRQDLQILNQVFADPSILKIFHGSNMDIIWLQRDLGLYIVGLFDTYHASWALHYPKHSLAFLLKKFIDFDAAKQYQTADWRIRPLPEQMFDYARSDTHFLLYIFDQMRNELIDKSDRTHPDGDLIDSVMRDSKQECLQRYERSPYDDKYGLGHLGWYNMLSRSSALLIPEQFSVFRRLHQWRDEVARDEDESPSVVMPKRFLFDIAHALPMDVQSLVSCTRHTVSKSFQARKQELVKVIKEARAAGAQGPEMKQLFGEIEFKGLGRHAGISGNSATATASAHVQMTSTPTATEAASTADAMKPTDQLDFRQKSSAFWGSSMIGPRSVPAVRGSTSLERLYLTLPLPPLSTEVFMRETDEEPNRSSELPLKLEEPAQQQQVSNRTASVDESFVIRGSRSSNLNGEMSTRPTRSTASGGVADTVDNVSMEDTASTQRAGEDETQQSKRKHEVQERRREKKRLKLEQTLGAREGQEGDEEEPFDYESAPSVIHAKIGQEGKDSASKSANPYSKSLNAPKGMRKIQKELPGKSFTFKK

Features

Showing features for compositional bias.

TypeIDPosition(s)Description
Compositional bias657-718Polar residues
Compositional bias719-759Basic and acidic residues

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
JAPUFD010000001
EMBL· GenBank· DDBJ
MDI1485030.1
EMBL· GenBank· DDBJ
Genomic DNA

Similar Proteins

Disclaimer

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