A0A9E2XPT0 · A0A9E2XPT0_9BURK

  • Protein
    23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
  • Gene
    rlmD
  • Status
    UniProtKB unreviewed (TrEMBL)
  • Amino acids
  • Protein existence
    Inferred from homology
  • Annotation score
    2/5

Function

function

Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.

Catalytic activity

Features

Showing features for binding site, active site.

145250100150200250300350400450
Type
IDPosition(s)Description
Binding site71[4Fe-4S] cluster (UniProtKB | ChEBI)
Binding site81[4Fe-4S] cluster (UniProtKB | ChEBI)
Binding site84[4Fe-4S] cluster (UniProtKB | ChEBI)
Binding site163[4Fe-4S] cluster (UniProtKB | ChEBI)
Binding site271S-adenosyl-L-methionine (UniProtKB | ChEBI)
Binding site300S-adenosyl-L-methionine (UniProtKB | ChEBI)
Binding site305S-adenosyl-L-methionine (UniProtKB | ChEBI)
Binding site321S-adenosyl-L-methionine (UniProtKB | ChEBI)
Binding site349S-adenosyl-L-methionine (UniProtKB | ChEBI)
Binding site370S-adenosyl-L-methionine (UniProtKB | ChEBI)
Active site407Nucleophile

GO annotations

AspectTerm
Molecular Function4 iron, 4 sulfur cluster binding
Molecular Functioniron ion binding
Molecular FunctionRNA binding
Molecular FunctionrRNA (uridine-C5-)-methyltransferase activity
Biological ProcessrRNA base methylation

Keywords

Enzyme and pathway databases

Names & Taxonomy

Protein names

  • Recommended name
    23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
  • EC number
  • Alternative names
    • 23S rRNA(m5U1939)-methyltransferase

Gene names

    • Name
      rlmD
    • ORF names
      JO006_05955

Organism names

  • Taxonomic identifier
  • Organism
  • Strain
    • CP_BE_RX_35
  • Taxonomic lineage
    Bacteria > Pseudomonadota > Betaproteobacteria > Burkholderiales > Sphaerotilaceae > Roseateles

Accessions

  • Primary accession
    A0A9E2XPT0

Proteomes

Family & Domains

Features

Showing features for domain.

TypeIDPosition(s)Description
Domain1-58TRAM

Sequence similarities

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    452
  • Mass (Da)
    49,912
  • Last updated
    2023-05-03 v1
  • Checksum
    4C4D932798AF7D09
MTQVSEWLKVKSLDLEAQGVAHSEEGKVVFIEGALPGEEVQVTVGRKKNNWEQGTMVAMRRESSQRVKPGCPHFGLHAGACGGCKMQHLHPGAQVAVKQRVVEDNLWHLGKVKAETLLRPIEGPAWGYRYRARFSVRYVAKKGQVLIGFHERKSRYVADMQVCKVVPKVVSDLLMPMRELISSMAERDRLPQIELAMGDQVIALVLRHLNPLPEGDKALLRAFAGEHGVQWWLQPKGPDTVHLLDEGGPELAYTLPEFGVLMPFKPTDFTQVNPHINTVLVGRALRLLDVKREERVIDWFCGLGNFTLPLATQAREVLGIEGSEALVQRSRENAVRNGLQAKTSFVARNLFEMTPELLAADGTADKWLVDPPREGAFALAKAIADIVQNPSLAPGWTPPRRIVYVSCNPATLARDAGLLVNVAGYQCTAASAVNMFPHTAHVESIAVFERAS

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
JAFALK010000024
EMBL· GenBank· DDBJ
MBV8501243.1
EMBL· GenBank· DDBJ
Genomic DNA

Similar Proteins

Disclaimer

Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. Our staff consists of biologists and biochemists that are not trained to give medical advice.
We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.
Help