A0A926JVZ2 · A0A926JVZ2_9FLAO

  • Protein
    DNA-directed RNA polymerase subunit beta'
  • Gene
    rpoC
  • Status
    UniProtKB unreviewed (TrEMBL)
  • Amino acids
  • Protein existence
    Inferred from homology
  • Annotation score
    3/5

Function

function

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.

Caution

Lacks conserved residue(s) required for the propagation of feature annotation.
The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.

Catalytic activity

Cofactor

Mg2+ (UniProtKB | Rhea| CHEBI:18420 )

Note: Binds 1 Mg2+ ion per subunit.

Features

Showing features for binding site.

TypeIDPosition(s)Description
Binding site408Mg2+ (UniProtKB | ChEBI)
Binding site410Mg2+ (UniProtKB | ChEBI)
Binding site412Mg2+ (UniProtKB | ChEBI)
Binding site756Zn2+ 2 (UniProtKB | ChEBI)
Binding site830Zn2+ 2 (UniProtKB | ChEBI)
Binding site837Zn2+ 2 (UniProtKB | ChEBI)
Binding site840Zn2+ 2 (UniProtKB | ChEBI)

GO annotations

AspectTerm
Cellular ComponentDNA-directed RNA polymerase complex
Molecular FunctionDNA binding
Molecular FunctionDNA-directed 5'-3' RNA polymerase activity
Molecular Functionmagnesium ion binding
Molecular Functionzinc ion binding
Biological ProcessDNA-templated transcription

Keywords

Enzyme and pathway databases

Names & Taxonomy

Protein names

  • Recommended name
    DNA-directed RNA polymerase subunit beta'
  • EC number
  • Short names
    RNAP subunit beta'
  • Alternative names
    • RNA polymerase subunit beta'
    • Transcriptase subunit beta'

Gene names

    • Name
      rpoC
    • ORF names
      IBL28_21720

Organism names

  • Taxonomic identifier
  • Organism
  • Strain
    • FJxs
  • Taxonomic lineage
    Bacteria > Bacteroidota > Flavobacteriia > Flavobacteriales > Flavobacteriaceae > Sinomicrobium

Accessions

  • Primary accession
    A0A926JVZ2

Proteomes

Subcellular Location

Keywords

Interaction

Subunit

The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription.

Family & Domains

Features

Showing features for domain, compositional bias, region.

Type
IDPosition(s)Description
Domain183-462RNA polymerase N-terminal
Compositional bias259-276Polar residues
Region259-278Disordered

Sequence similarities

Belongs to the RNA polymerase beta' chain family.

Family and domain databases

Sequence

  • Sequence status
    Fragment
  • Length
    1,364
  • Mass (Da)
    152,528
  • Last updated
    2023-02-22 v1
  • MD5 Checksum
    7937DA0B54BA7D4C485F40206CFAB93B
KYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPIAHIWYFRSLPNKIGYLLGLPSKKLDMIIYYERYVVIQPGNAKNAEGEPVQSMDFLTEEEYLNILDSLPQDNQYLEDTDPNKFIAKMGAECIIELLNRIDLDALSYDLRHKANNETSKQRKTEALKRLQVVEAFREAQQNRENKPEWMILKVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLMEIKAPEVILRNEKRMLQESVDSLFDNTRKSSAVKTESNRPLKSLSDSLKGKQGRFRQNLLGKRVDYSARSVIVVGPELRMYECGLPKDMAAEIYKPFVIRKLIERGIVKTVKSAKKIIDRKEPVVWDILDNVIKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLACTAFNADFDGDQMAVHLPLGPEAILEAQLLMLASHNILNPANGSPITVPSQDMVLGLYYMTKERRSTPEEPVKGEGLTFYSPEEVIIAYNEKKVDLNAIVKVRTKDFNEDRELVNQIIETTVGRILFNEVVPEEAGYINTVLTKKSLRDIIGYVLKVTNVPATADFLDKIKNTGYRMAFQGGLSFSLGDIIIPKEKHQMIGEANEQVEGIMMNYNMGLITNNERYNQVIDVWTSTNAMLTELAMKRIREDKQGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAGGGEIIENPILSNFKEGLSILEYFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIINTEDCGTLRGVEVEALKKNEEVVESLGERILGRVSLNDVYDPLTEELLVSSGEEITEEMVKKIDASPLERMEVRSALTCEAKQGICAKCYGRNLATGKMVQRGESVGVIAAQSIGEPGTQLTLRTFHVGGIAGNISEENKLLAKFDGVATIEDLKIVKSENSEGEKVDVVISRTSEVKITDKKTGIVLSTNNIPYGSQIFIKDGQKISKDDVICQWDPYNGVIISEFSGSIVYENIEQGITYQVEIDEQTGFQEKVISESRNKKLIPTLLIKGSKGETLRSYNLPVGAHIMVDDGEKIKEGKVLVKIPRKSAKAGDITGGLPRVTELFEARNPSNPAVVSEIDGVVSFGKIKRGNREIIVESKLGELKKYLVKLSNQILVQENDFVRAGMPLSDGSVTPEDILKIKGPSAVQQYLVNEVQEVYRLQGVKINDKHFEVVVRQMMRKVRINDPGDTIFLEGQLVHKDDFIEENDELFGKKVVEDAGDSTALKPGQIITLRQLRDENSILKRADKKLVVARDVVPATASPVLQGITRASLQTKSFISAASFQETTKVLNEAAVNGKVDTLEGLKENVIVGHKIPAGTGMRDYDNIIVGSKEEYDEIMSNKKEASLY

Features

Showing features for non-terminal residue, compositional bias.

Type
IDPosition(s)Description
Non-terminal residue1
Compositional bias259-276Polar residues

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
JACVDC010000139
EMBL· GenBank· DDBJ
MBC9798600.1
EMBL· GenBank· DDBJ
Genomic DNA

Similar Proteins

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