A0A8T1R6R6 · A0A8T1R6R6_CARIL

Function

function

RNA helicase.

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.

Catalytic activity

GO annotations

all annotationsall molecular functionnucleotide bindingmolecular_functionnucleic acid bindingdna bindingchromatin bindingdna-binding transcription factor activityrna bindingcytoskeletal motor activitycatalytic activitynuclease activitysignaling receptor bindingstructural molecule activitytransporter activitybindingprotein bindingtranslation factor activity, rna bindinglipid bindingkinase activitytransferase activityhydrolase activityoxygen bindingenzyme regulator activitycarbohydrate bindingsignaling receptor activitytranslation regulator activitytranscription regulator activityother molecular functionall biological processcarbohydrate metabolic processgeneration of precursor metabolites and energynucleobase-containing compound metabolic processdna metabolic processtranslationlipid metabolic processtransportresponse to stresscell cyclecell communicationsignal transductioncell-cell signalingmulticellular organism developmentcircadian rhythmbiological_processmetabolic processcatabolic processbiosynthetic processresponse to light stimulusresponse to external stimulustropismresponse to biotic stimulusresponse to abiotic stimulusresponse to endogenous stimulusembryo developmentpost-embryonic developmentfruit ripeningabscissionpollinationflower developmentcellular processprogrammed cell deathphotosynthesiscellular component organizationcell growthprotein metabolic processcellular homeostasissecondary metabolic processreproductive processcell differentiationprotein modification processgrowthepigenetic regulation of gene expressionresponse to chemicalanatomical structure developmentregulation of molecular functionother biological processall cellular componentcellular_componentextracellular regioncell wallintracellular anatomical structurenucleusnuclear envelopenucleoplasmnucleoluscytoplasmmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuscytosolribosomecytoskeletonplasma membranechloroplastplastidthylakoidmembraneexternal encapsulating structureother cellular component
Cell color indicative of number of GO terms
AspectTerm
Cellular Componentmembrane
Cellular Componentnucleus
Molecular FunctionATP binding
Molecular Functionhelicase activity
Molecular Functionhydrolase activity
Molecular FunctionRNA binding
Biological Processribosome biogenesis

Keywords

Enzyme and pathway databases

Names & Taxonomy

Protein names

  • Recommended name
    ATP-dependent RNA helicase
  • EC number

Gene names

    • ORF names
      CIPAW_03G202900
      , I3842_03G192800

Organism names

  • Taxonomic identifier
  • Taxonomic lineage
    Eukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > eudicotyledons > Gunneridae > Pentapetalae > rosids > fabids > Fagales > Juglandaceae > Carya

Accessions

  • Primary accession
    A0A8T1R6R6

Proteomes

Subcellular Location

Features

Showing features for transmembrane.

TypeIDPosition(s)Description
Transmembrane39-57Helical

Keywords

  • Cellular component

Family & Domains

Features

Showing features for region, domain, compositional bias.

TypeIDPosition(s)Description
Region1-25Disordered
Domain87-224Helicase ATP-binding
Domain290-459Helicase C-terminal
Region540-573Disordered
Compositional bias553-573Basic residues

Domain

The Q motif is unique to and characteristic of the DEAD box family of RNA helicases and controls ATP binding and hydrolysis.

Sequence similarities

Belongs to the DEAD box helicase family. DDX31/DBP7 subfamily.

Keywords

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    573
  • Mass (Da)
    65,888
  • Last updated
    2022-10-12 v1
  • Checksum
    3B70C55F1B9A44AF
MKARYSRRALSPALASTPPYATSSEKGWTSTLRRWYRPKRFQLLSLAVMYLLMLLLERVKLLRIWLLLFTNCRGTNLVFSGLMGPLVCEILQKLLHRFHWIVPGYIMGGENRSKEKARLRKGISVLVATPGRLLDHLRHTSSFLHANLRWIIFDEADRILELGFGKEIEEILDILGSRQDASVDEEIAESYISEHPRQNVLLSATLNEKVNHLAKISLENPVMIGLDYKKKQPVLSIKDFGSLGSDANYELEHPVKMMSSSNGDFRVPAQLVQRYVKVSCGLRLAVLLSILKDLLERGTSQKIVVFFSTCDAVDFHHSLLSEFKFSPHPQPEEQLRQMFVGCKTLRLHGNMKQDDRRTTFQAFKTEKLALLLSTDVAARGLDFPKVRFIIQYDSPGEATEYVHRVGRTARLGERGDSLLFLQPVEMDYLQDLEKHGISLTEYPLLKVLDSFPLYNEKRHVKKVLSLESHPWVLLLQKALEAFILAEPRMKKLAITTFCSWVRAYAAHRGELKRIFMVKKLHLGHVAKSFALKEQPSLVGKSFQKETKKRKRDEKQKGLSKKRKFSRKTLQQKI

Computationally mapped potential isoform sequences

There are 2 potential isoforms mapped to this entry

View all
EntryEntry nameGene nameLength
A0A8T1R6T5A0A8T1R6T5_CARILCIPAW_03G202900607
A0A8T1R645A0A8T1R645_CARILCIPAW_03G202900489

Features

Showing features for compositional bias.

TypeIDPosition(s)Description
Compositional bias553-573Basic residues

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
CM031811
EMBL· GenBank· DDBJ
KAG6661841.1
EMBL· GenBank· DDBJ
Genomic DNA
CM031827
EMBL· GenBank· DDBJ
KAG6723115.1
EMBL· GenBank· DDBJ
Genomic DNA

Similar Proteins

Disclaimer

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