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A0A8T0P6L2 · A0A8T0P6L2_PANVG

Function

function

Histone-binding component that specifically recognizes H3 tails trimethylated on 'Lys-4' (H3K4me3), which mark transcription start sites of virtually all active genes.

Caution

The sequence shown here is derived from an EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is preliminary data.

GO annotations

all annotationsall molecular functionnucleotide bindingmolecular_functionnucleic acid bindingdna bindingchromatin bindingdna-binding transcription factor activityrna bindingcytoskeletal motor activitycatalytic activitynuclease activitysignaling receptor bindingstructural molecule activitytransporter activitybindingprotein bindingtranslation factor activity, rna bindinglipid bindingkinase activitytransferase activityhydrolase activityoxygen bindingenzyme regulator activitycarbohydrate bindingsignaling receptor activitytranslation regulator activitytranscription regulator activityother molecular functionall biological processcarbohydrate metabolic processgeneration of precursor metabolites and energynucleobase-containing compound metabolic processdna metabolic processtranslationlipid metabolic processtransportresponse to stresscell cyclecell communicationsignal transductioncell-cell signalingmulticellular organism developmentcircadian rhythmbiological_processmetabolic processcatabolic processbiosynthetic processresponse to light stimulusresponse to external stimulustropismresponse to biotic stimulusresponse to abiotic stimulusresponse to endogenous stimulusembryo developmentpost-embryonic developmentfruit ripeningabscissionpollinationflower developmentcellular processprogrammed cell deathphotosynthesiscellular component organizationcell growthprotein metabolic processcellular homeostasissecondary metabolic processreproductive processcell differentiationprotein modification processgrowthepigenetic regulation of gene expressionresponse to chemicalanatomical structure developmentregulation of molecular functionother biological processall cellular componentcellular_componentextracellular regioncell wallintracellular anatomical structurenucleusnuclear envelopenucleoplasmnucleoluscytoplasmmitochondrionlysosomeendosomevacuoleperoxisomeendoplasmic reticulumgolgi apparatuscytosolribosomecytoskeletonplasma membranechloroplastplastidthylakoidmembraneexternal encapsulating structureother cellular component
Cell color indicative of number of GO terms
AspectTerm
Cellular Componentnucleus
Molecular Functionhistone binding
Molecular Functionmetal ion binding
Molecular Functiontranscription cis-regulatory region binding
Molecular Functiontranscription coregulator activity
Biological Processchromatin organization
Biological Processregulation of DNA-templated transcription

Keywords

Names & Taxonomy

Protein names

  • Recommended name
    PHD finger protein ALFIN-LIKE

Gene names

    • ORF names
      PVAP13_8NG196400

Organism names

  • Taxonomic identifier
  • Strain
    • AP13
  • Taxonomic lineage
    Eukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > Liliopsida > Poales > Poaceae > PACMAD clade > Panicoideae > Panicodae > Paniceae > Panicinae > Panicum > Panicum sect. Hiantes

Accessions

  • Primary accession
    A0A8T0P6L2

Proteomes

Subcellular Location

Keywords

  • Cellular component

PTM/Processing

Features

Showing features for signal, chain.

Type
IDPosition(s)Description
Signal1-22
ChainPRO_503585232823-186PHD finger protein ALFIN-LIKE

Interaction

Subunit

Interacts with H3K4me3 and to a lesser extent with H3K4me2.

Family & Domains

Features

Showing features for region, compositional bias, domain.

Type
IDPosition(s)Description
Region70-129Disordered
Compositional bias84-98Polar residues
Compositional bias113-127Acidic residues
Domain128-180PHD-type

Domain

The PHD-type zinc finger mediates the binding to H3K4me3.

Sequence similarities

Belongs to the Alfin family.

Keywords

Family and domain databases

Sequence

  • Sequence status
    Complete
  • Length
    186
  • Mass (Da)
    20,734
  • Last updated
    2022-10-12 v1
  • MD5 Checksum
    1E09CAB3471C8EAA3BF083B93D39D8FA
MGSELACRRVMLGCWLWHFTLEQDLGLTKNPVKSMHISGASQTSFYSLLSQRLFVMINNLPTIYEVVTGTAKKQTKEKTPKSSSKSNKSGTKPPRQPEPNSRGSKMPPPKDEDDSGGEEDEEEEDHENTLCGSCGDNYGQDEFWICCDACETWFHGKCVKITPAKAEHIKHYKCPNCSGSGKRARA

Computationally mapped potential isoform sequences

There are 4 potential isoforms mapped to this entry

View all
EntryEntry nameGene nameLength
A0A8T0P761A0A8T0P761_PANVGPVAP13_8NG196400255
A0A8T0PDT7A0A8T0PDT7_PANVGPVAP13_8NG196400254
A0A8T0P3J4A0A8T0P3J4_PANVGPVAP13_8NG196400225
A0A8T0PBJ9A0A8T0PBJ9_PANVGPVAP13_8NG196400243

Features

Showing features for compositional bias.

TypeIDPosition(s)Description
Compositional bias84-98Polar residues
Compositional bias113-127Acidic residues

Keywords

Sequence databases

Nucleotide SequenceProtein SequenceMolecule TypeStatus
CM029052
EMBL· GenBank· DDBJ
KAG2556638.1
EMBL· GenBank· DDBJ
Genomic DNA

Similar Proteins

Disclaimer

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