A0A8S1ZPP0 · A0A8S1ZPP0_ARAAE
- ProteinRRM domain-containing protein
- StatusUniProtKB unreviewed (TrEMBL)
- Amino acids634 (go to sequence)
- Protein existenceInferred from homology
- Annotation score2/5
Function
GO annotations
all annotations | all molecular function | nucleotide binding | molecular_function | nucleic acid binding | dna binding | chromatin binding | dna-binding transcription factor activity | rna binding | cytoskeletal motor activity | catalytic activity | nuclease activity | signaling receptor binding | structural molecule activity | transporter activity | binding | protein binding | translation factor activity, rna binding | lipid binding | kinase activity | transferase activity | hydrolase activity | oxygen binding | enzyme regulator activity | carbohydrate binding | signaling receptor activity | translation regulator activity | transcription regulator activity | other molecular function | all biological process | carbohydrate metabolic process | generation of precursor metabolites and energy | nucleobase-containing compound metabolic process | dna metabolic process | translation | lipid metabolic process | transport | response to stress | cell cycle | cell communication | signal transduction | cell-cell signaling | multicellular organism development | circadian rhythm | biological_process | metabolic process | catabolic process | biosynthetic process | response to light stimulus | response to external stimulus | tropism | response to biotic stimulus | response to abiotic stimulus | response to endogenous stimulus | embryo development | post-embryonic development | fruit ripening | abscission | pollination | flower development | cellular process | programmed cell death | photosynthesis | cellular component organization | cell growth | protein metabolic process | cellular homeostasis | secondary metabolic process | reproductive process | cell differentiation | protein modification process | growth | epigenetic regulation of gene expression | response to chemical | anatomical structure development | regulation of molecular function | other biological process | all cellular component | cellular_component | extracellular region | cell wall | intracellular anatomical structure | nucleus | nuclear envelope | nucleoplasm | nucleolus | cytoplasm | mitochondrion | lysosome | endosome | vacuole | peroxisome | endoplasmic reticulum | golgi apparatus | cytosol | ribosome | cytoskeleton | plasma membrane | chloroplast | plastid | thylakoid | membrane | external encapsulating structure | other cellular component | |||
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Aspect | Term | |
---|---|---|
Cellular Component | commitment complex | |
Cellular Component | nuclear speck | |
Cellular Component | U2-type prespliceosome | |
Cellular Component | U2AF complex | |
Molecular Function | poly-pyrimidine tract binding | |
Molecular Function | pre-mRNA 3'-splice site binding | |
Biological Process | mRNA processing | |
Biological Process | RNA splicing |
Keywords
- Molecular function
- Biological process
Names & Taxonomy
Protein names
- Recommended nameRRM domain-containing protein
Gene names
Organism names
- Taxonomic lineageEukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > eudicotyledons > Gunneridae > Pentapetalae > rosids > malvids > Brassicales > Brassicaceae > Camelineae > Arabidopsis
Accessions
- Primary accessionA0A8S1ZPP0
Proteomes
Subcellular Location
Structure
Family & Domains
Features
Showing features for region, compositional bias, domain.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Region | 1-200 | Disordered | ||||
Sequence: MMTYEGNGDGVAVSTENHNENYMSLGSSPFQSLGGDDGHEDSKSRQESHDLEKESSKISEKDRDKDREKDRDREKSRDRDREKSRDRDREKSRDRDRERSKDRERDRHHRDRHRDRSRERERDDLDDDDHHHRSRDRDRRRSRDRDREVRHRRRSRSRSRSRSERRSRSEHRHKSEHRSRSRSQSRSRSKSKRRSGFDMA | ||||||
Compositional bias | 10-31 | Polar residues | ||||
Sequence: GVAVSTENHNENYMSLGSSPFQ | ||||||
Compositional bias | 36-109 | Basic and acidic residues | ||||
Sequence: DDGHEDSKSRQESHDLEKESSKISEKDRDKDREKDRDREKSRDRDREKSRDRDREKSRDRDRERSKDRERDRHH | ||||||
Compositional bias | 116-145 | Basic and acidic residues | ||||
Sequence: RSRERERDDLDDDDHHHRSRDRDRRRSRDR | ||||||
Compositional bias | 146-190 | Basic residues | ||||
Sequence: DREVRHRRRSRSRSRSRSERRSRSEHRHKSEHRSRSRSQSRSRSK | ||||||
Domain | 300-383 | RRM | ||||
Sequence: RRVYVGGLPPTANEQSVATFFSQVMSAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIILEGVPVKVRRPTD | ||||||
Domain | 420-498 | RRM | ||||
Sequence: DRIFVGGLPYYFTEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQDPSVTDIACAALNGIKMGDKTLTVRRAIQ |
Sequence similarities
Belongs to the splicing factor SR family.
Family and domain databases
Sequence
- Sequence statusComplete
- Length634
- Mass (Da)71,062
- Last updated2022-10-12 v1
- ChecksumD2D5B6A47BE47FE2
Features
Showing features for compositional bias.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Compositional bias | 10-31 | Polar residues | ||||
Sequence: GVAVSTENHNENYMSLGSSPFQ | ||||||
Compositional bias | 36-109 | Basic and acidic residues | ||||
Sequence: DDGHEDSKSRQESHDLEKESSKISEKDRDKDREKDRDREKSRDRDREKSRDRDREKSRDRDRERSKDRERDRHH | ||||||
Compositional bias | 116-145 | Basic and acidic residues | ||||
Sequence: RSRERERDDLDDDDHHHRSRDRDRRRSRDR | ||||||
Compositional bias | 146-190 | Basic residues | ||||
Sequence: DREVRHRRRSRSRSRSRSERRSRSEHRHKSEHRSRSRSQSRSRSK |