A0A8B8XDM1 · A0A8B8XDM1_BALMU
- ProteinRNA-binding protein 8A
- GeneLIX1L
- StatusUniProtKB unreviewed (TrEMBL)
- Amino acids501 (go to sequence)
- Protein existenceInferred from homology
- Annotation score3/5
Function
function
Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
GO annotations
all annotations | all molecular function | virus receptor activity | dna binding | rna binding | cytoskeletal motor activity | catalytic activity | gtpase activity | structural molecule activity | transporter activity | cytoskeletal protein binding | lipid binding | cyclase activity | antioxidant activity | oxidoreductase activity | transferase activity | hydrolase activity | lyase activity | isomerase activity | ligase activity | protein tag activity | cargo receptor activity | histone binding | protein folding chaperone | translation regulator activity | nutrient reservoir activity | receptor ligand activity | molecular transducer activity | molecular adaptor activity | toxin activity | cell adhesion mediator activity | molecular function regulator activity | virus coreceptor activity | catalytic activity, acting on a protein | catalytic activity, acting on dna | catalytic activity, acting on rna | molecular carrier activity | transcription regulator activity | general transcription initiation factor activity | molecular sensor activity | molecular sequestering activity | atp-dependent activity | other molecular function | all biological process | mitotic cell cycle | cytokinesis | cytoplasmic translation | immune system process | muscle system process | circulatory system process | renal system process | respiratory system process | carbohydrate metabolic process | generation of precursor metabolites and energy | dna replication | dna repair | dna recombination | chromatin organization | dna-templated transcription | regulation of dna-templated transcription | trna metabolic process | protein folding | protein glycosylation | amino acid metabolic process | modified amino acid metabolic process | lipid metabolic process | vitamin metabolic process | sulfur compound metabolic process | intracellular protein transport | nucleocytoplasmic transport | autophagy | inflammatory response | mitochondrion organization | cytoskeleton organization | microtubule-based movement | peroxisome organization | lysosome organization | chromosome segregation | cell adhesion | establishment or maintenance of cell polarity | programmed cell death | photosynthesis | mrna metabolic process | snrna metabolic process | vesicle-mediated transport | reproductive process | digestive system process | signaling | cell differentiation | protein catabolic process | extracellular matrix organization | regulatory ncrna-mediated gene silencing | telomere organization | cell junction organization | wound healing | ribosome biogenesis | cilium organization | anatomical structure development | cell motility | nervous system process | endocrine process | protein maturation | transmembrane transport | nucleobase-containing small molecule metabolic process | hepaticobiliary system process | membrane organization | protein-containing complex assembly | cell wall organization or biogenesis | nitrogen cycle metabolic process | protein localization to plasma membrane | defense response to other organism | detoxification | meiotic nuclear division | mitotic nuclear division | mitochondrial gene expression | carbohydrate derivative metabolic process | other biological process | all cellular component | nuclear chromosome | extracellular region | extracellular space | cell wall | nucleus | nuclear envelope | nucleoplasm | chromosome | nucleolus | mitochondrion | lysosome | endosome | vacuole | peroxisome | endoplasmic reticulum | golgi apparatus | lipid droplet | microtubule organizing center | cytosol | ribosome | cytoskeleton | plasma membrane | cilium | plastid | thylakoid | external encapsulating structure | extracellular matrix | cytoplasmic vesicle | organelle | other cellular component | |||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Aspect | Term | |
---|---|---|
Cellular Component | cytoplasm | |
Cellular Component | nuclear speck | |
Cellular Component | spliceosomal complex | |
Molecular Function | mRNA binding | |
Biological Process | autophagosome maturation | |
Biological Process | mRNA processing | |
Biological Process | mRNA transport | |
Biological Process | RNA splicing |
Keywords
- Molecular function
- Biological process
Names & Taxonomy
Protein names
- Recommended nameRNA-binding protein 8A
Gene names
Organism names
- Taxonomic lineageEukaryota > Metazoa > Chordata > Craniata > Vertebrata > Euteleostomi > Mammalia > Eutheria > Laurasiatheria > Artiodactyla > Whippomorpha > Cetacea > Mysticeti > Balaenopteridae > Balaenoptera
Accessions
- Primary accessionA0A8B8XDM1
Proteomes
Subcellular Location
Interaction
Subunit
Heterodimer with MAGOH. Part of the mRNA splicing-dependent exon junction complex (EJC) complex; the core complex contains CASC3, EIF4A3, MAGOH and RBM8A.
Structure
Family & Domains
Features
Showing features for region, compositional bias, domain.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Region | 1-64 | Disordered | ||||
Sequence: METLRAQRLQPGVGTSGRGTLRALRPGVTGAAAATATPQAGPPPAPPPPAPPPPPLLLSGAAGL | ||||||
Compositional bias | 39-61 | Pro residues | ||||
Sequence: QAGPPPAPPPPAPPPPPLLLSGA | ||||||
Region | 356-395 | Disordered | ||||
Sequence: KEKAKKRKGRGFGSEEGSRARMREDYDSVEQDGDEPGPQR | ||||||
Compositional bias | 363-392 | Basic and acidic residues | ||||
Sequence: KGRGFGSEEGSRARMREDYDSVEQDGDEPG | ||||||
Domain | 400-478 | RRM | ||||
Sequence: WILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFV | ||||||
Region | 478-501 | Disordered | ||||
Sequence: VRGPPKGKRRGGRRRSRSPDRRRR | ||||||
Compositional bias | 483-501 | Basic residues | ||||
Sequence: KGKRRGGRRRSRSPDRRRR |
Sequence similarities
Belongs to the LIX1 family.
Belongs to the RBM8A family.
Family and domain databases
Sequence
- Sequence statusComplete
- Length501
- Mass (Da)55,134
- Last updated2022-01-19 v1
- Checksum5CA191A09D8173A0
Computationally mapped potential isoform sequences
There is 1 potential isoform mapped to this entry
Entry | Entry name | Gene name | Length | ||
---|---|---|---|---|---|
A0A8B8XDN0 | A0A8B8XDN0_BALMU | LIX1L | 500 |
Features
Showing features for compositional bias.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Compositional bias | 39-61 | Pro residues | ||||
Sequence: QAGPPPAPPPPAPPPPPLLLSGA | ||||||
Compositional bias | 363-392 | Basic and acidic residues | ||||
Sequence: KGRGFGSEEGSRARMREDYDSVEQDGDEPG | ||||||
Compositional bias | 483-501 | Basic residues | ||||
Sequence: KGKRRGGRRRSRSPDRRRR |
Keywords
- Technical term