A0A6P4A4K6 · A0A6P4A4K6_ZIZJJ
- ProteinSplicing factor U2af large subunit B isoform X2
- GeneLOC107424850
- StatusUniProtKB unreviewed (TrEMBL)
- Amino acids602 (go to sequence)
- Protein existenceInferred from homology
- Annotation score2/5
Function
GO annotations
all annotations | all molecular function | nucleotide binding | molecular_function | nucleic acid binding | dna binding | chromatin binding | dna-binding transcription factor activity | rna binding | cytoskeletal motor activity | catalytic activity | nuclease activity | signaling receptor binding | structural molecule activity | transporter activity | binding | protein binding | translation factor activity, rna binding | lipid binding | kinase activity | transferase activity | hydrolase activity | oxygen binding | enzyme regulator activity | carbohydrate binding | signaling receptor activity | translation regulator activity | transcription regulator activity | other molecular function | all biological process | carbohydrate metabolic process | generation of precursor metabolites and energy | nucleobase-containing compound metabolic process | dna metabolic process | translation | lipid metabolic process | transport | response to stress | cell cycle | cell communication | signal transduction | cell-cell signaling | multicellular organism development | circadian rhythm | biological_process | metabolic process | catabolic process | biosynthetic process | response to light stimulus | response to external stimulus | tropism | response to biotic stimulus | response to abiotic stimulus | response to endogenous stimulus | embryo development | post-embryonic development | fruit ripening | abscission | pollination | flower development | cellular process | programmed cell death | photosynthesis | cellular component organization | cell growth | protein metabolic process | cellular homeostasis | secondary metabolic process | reproductive process | cell differentiation | protein modification process | growth | epigenetic regulation of gene expression | response to chemical | anatomical structure development | regulation of molecular function | other biological process | all cellular component | cellular_component | extracellular region | cell wall | intracellular anatomical structure | nucleus | nuclear envelope | nucleoplasm | nucleolus | cytoplasm | mitochondrion | lysosome | endosome | vacuole | peroxisome | endoplasmic reticulum | golgi apparatus | cytosol | ribosome | cytoskeleton | plasma membrane | chloroplast | plastid | thylakoid | membrane | external encapsulating structure | other cellular component | |||
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Aspect | Term | |
---|---|---|
Cellular Component | nucleus | |
Molecular Function | RNA binding | |
Biological Process | mRNA processing | |
Biological Process | RNA splicing |
Keywords
- Molecular function
- Biological process
Names & Taxonomy
Protein names
- Submitted names
Gene names
Organism names
- Taxonomic lineageEukaryota > Viridiplantae > Streptophyta > Embryophyta > Tracheophyta > Spermatophyta > Magnoliopsida > eudicotyledons > Gunneridae > Pentapetalae > rosids > fabids > Rosales > Rhamnaceae > Paliureae > Ziziphus
Accessions
- Primary accessionA0A6P4A4K6
Proteomes
Subcellular Location
Structure
Family & Domains
Features
Showing features for region, compositional bias, domain.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Region | 1-208 | Disordered | ||||
Sequence: MADYEERYEGNGEEVDNYGGGGGGSTPHPRSNSHGVPDDYNESKSQHGSRDYERESSRSREKEREKGRDKEKDRDKDRERDRDREGRRSRDRERERDKDRERDRDRDRDKDRDRERDRDRDRDRHHRDRHRDRSERRERGRDRDDDDDEEFYRSRDYDRRRDYDRDREDRHRRRSSSRSRGRSEHRSKSRSRSRSRSKSKRISGFDMA | ||||||
Compositional bias | 35-173 | Basic and acidic residues | ||||
Sequence: GVPDDYNESKSQHGSRDYERESSRSREKEREKGRDKEKDRDKDRERDRDREGRRSRDRERERDKDRERDRDRDRDKDRDRERDRDRDRDRHHRDRHRDRSERRERGRDRDDDDDEEFYRSRDYDRRRDYDRDREDRHRR | ||||||
Compositional bias | 174-198 | Basic residues | ||||
Sequence: RSSSRSRGRSEHRSKSRSRSRSRSK | ||||||
Domain | 266-349 | RRM | ||||
Sequence: RRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSD | ||||||
Domain | 386-464 | RRM | ||||
Sequence: DRIFVGGLPYYFTEAQIKELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLTVRRANQ | ||||||
Domain | 507-593 | RRM | ||||
Sequence: QVVSADELRDDEEYEDIVEDMRQEGGKFGPLASVVIPRPLPDGQPSPGVGKVFLEYVDADSASKARAGLNGRKFGGNQVVAVFYPEN |
Sequence similarities
Belongs to the splicing factor SR family.
Family and domain databases
Sequence
- Sequence statusComplete
- Length602
- Mass (Da)67,492
- Last updated2020-12-02 v1
- ChecksumB04FAF2B6E22C9F0
Computationally mapped potential isoform sequences
There are 3 potential isoforms mapped to this entry
Entry | Entry name | Gene name | Length | ||
---|---|---|---|---|---|
A0A6P4AN13 | A0A6P4AN13_ZIZJJ | LOC107424850 | 603 | ||
A0A6P6GDN5 | A0A6P6GDN5_ZIZJJ | LOC107424850 | 396 | ||
A0A6P6GDI8 | A0A6P6GDI8_ZIZJJ | LOC107424850 | 395 |
Features
Showing features for compositional bias.
Type | ID | Position(s) | Description | |||
---|---|---|---|---|---|---|
Compositional bias | 35-173 | Basic and acidic residues | ||||
Sequence: GVPDDYNESKSQHGSRDYERESSRSREKEREKGRDKEKDRDKDRERDRDREGRRSRDRERERDKDRERDRDRDRDKDRDRERDRDRDRDRHHRDRHRDRSERRERGRDRDDDDDEEFYRSRDYDRRRDYDRDREDRHRR | ||||||
Compositional bias | 174-198 | Basic residues | ||||
Sequence: RSSSRSRGRSEHRSKSRSRSRSRSK |
Keywords
- Technical term